PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.02G177800.1.p | ||||||||
Common Name | GLYMA_02G177800, LOC100776650 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | G2-like | ||||||||
Protein Properties | Length: 214aa MW: 24274.6 Da PI: 7.1134 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 95.6 | 3.7e-30 | 75 | 129 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++Wt++LHe+Fv av++LGG++kA Pk++l++m+ k+Lt+ hvkSHLQkYR+ Glyma.02G177800.1.p 75 KNRIKWTKDLHEQFVAAVNSLGGPQKAKPKAVLQMMNSKSLTIFHVKSHLQKYRT 129 78****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.23E-16 | 73 | 129 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-27 | 73 | 130 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-21 | 75 | 129 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.4E-8 | 79 | 128 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.4E-6 | 159 | 203 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MFGSVVDSFL SSDEDTFCET YREYSELPCH DVSLYEHFRH EEKRLEGDDS APVIEAEVVC 60 ATSGNSASSM VPTRKNRIKW TKDLHEQFVA AVNSLGGPQK AKPKAVLQMM NSKSLTIFHV 120 KSHLQKYRTT MYMQNSSKEG YKESKGIDMV TELQQKIYMQ IEESRLLQLE IGRGIQEQLE 180 AQRNLQMLVE EQKKQVNSVC GKNQIKQIGG SKS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-19 | 75 | 132 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-19 | 75 | 132 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 2e-19 | 75 | 132 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-19 | 75 | 132 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-19 | 75 | 132 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-19 | 75 | 132 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-19 | 75 | 132 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-19 | 75 | 132 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-19 | 75 | 132 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-19 | 75 | 132 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-19 | 75 | 132 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-19 | 75 | 132 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.02G177800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC236141 | 8e-52 | AC236141.2 Glycine max clone GM_WBb0004A16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014628629.1 | 1e-159 | myb family transcription factor PHL5 isoform X3 | ||||
Swissprot | Q0WVU3 | 2e-35 | PHL5_ARATH; Myb family transcription factor PHL5 | ||||
TrEMBL | K7K972 | 1e-158 | K7K972_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA02G30714.1 | 1e-157 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF18701 | 4 | 6 | Representative plant | OGRP78 | 17 | 262 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06800.1 | 8e-38 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.02G177800.1.p |
Entrez Gene | 100776650 |