PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.02G177500.1.p | ||||||||
Common Name | GLYMA_02G177500, LOC100819941 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | SBP | ||||||||
Protein Properties | Length: 359aa MW: 38349.8 Da PI: 9.9462 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 136.6 | 7.4e-43 | 74 | 150 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv gC++dls ak y++rhkvC +hsk+p+v+v+gleqrfCqqCsrfh lsefD++krsCr+rLa+hnerrrk+ Glyma.02G177500.1.p 74 RCQVAGCKVDLSGAKAYYSRHKVCAMHSKSPTVTVAGLEQRFCQQCSRFHLLSEFDQGKRSCRKRLAGHNERRRKPP 150 6**************************************************************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 5.1E-35 | 68 | 136 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.949 | 72 | 149 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.83E-40 | 73 | 154 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 8.0E-33 | 75 | 148 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MGSASVTKAP PSSSSSPNSS STESLDGLKF GQKIYFEEVS VAAAAATTTQ GGNKTRGGVS 60 ASKKGRGGSV QAPRCQVAGC KVDLSGAKAY YSRHKVCAMH SKSPTVTVAG LEQRFCQQCS 120 RFHLLSEFDQ GKRSCRKRLA GHNERRRKPP PSSVLTSRYG RLSLPIFDNN GRDDGFLMEF 180 ASYPKLTLRN TLPTQRSTEP APGNHAATLT WQGGSDTPSE FFLQGSGSSG GTSFLSSKHP 240 LVESYTGVTD SNCALSLLSS QTWGSRNTAP ATSFELNNNL FNFNGTSMTQ FAVASLQAAA 300 IHQLPNATSW LYLKGVDSGN CSPERVPNHG LAQISPPLHS HVHSELDVSQ QGRRHYMI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 7e-30 | 75 | 148 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young panicles. {ECO:0000269|PubMed:16861571}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.02G177500.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001354864.1 | 0.0 | squamosa promoter-binding-like protein 9a | ||||
Swissprot | A3C057 | 2e-58 | SPL17_ORYSJ; Squamosa promoter-binding-like protein 17 | ||||
TrEMBL | K7K967 | 0.0 | K7K967_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA02G30670.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4208 | 33 | 59 | Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42200.1 | 6e-51 | squamosa promoter binding protein-like 9 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.02G177500.1.p |
Entrez Gene | 100819941 |