PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.02G173900.1.p | ||||||||
Common Name | GLYMA_02G173900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C3H | ||||||||
Protein Properties | Length: 296aa MW: 31059.6 Da PI: 9.75 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 28.4 | 2.9e-09 | 98 | 123 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt++C+ f Ck+Gd+C+FaHg+ Glyma.02G173900.1.p 98 KTRICNKFNTAEGCKFGDKCHFAHGE 123 8***********************96 PP | |||||||
2 | zf-CCCH | 35.7 | 1.4e-11 | 262 | 286 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC +fa+ G C +G+rC+FaHg Glyma.02G173900.1.p 262 FKTKLCENFAK-GSCTFGERCHFAHG 286 69*********.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 12.042 | 32 | 60 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.8 | 32 | 59 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.81E-6 | 33 | 58 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.3E-7 | 34 | 57 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 1.6 | 40 | 57 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-14 | 94 | 127 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.4E-8 | 95 | 127 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.61 | 96 | 124 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.6E-4 | 96 | 123 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.2E-6 | 98 | 123 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 2.05E-15 | 158 | 238 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 3.9E-12 | 167 | 237 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 14.823 | 168 | 232 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 1.4E-16 | 168 | 236 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 2.80E-15 | 170 | 233 | No hit | No description |
Pfam | PF00013 | 4.6E-12 | 170 | 233 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:4.10.1000.10 | 4.4E-16 | 257 | 292 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.352 | 261 | 288 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-8 | 261 | 291 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.8E-7 | 261 | 287 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.1E-9 | 262 | 286 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MDVRKRGRPD VNLNGAVKKT KQELESLSSG VGSKSKPCTK FFSTAGCPFG EGCHFLHYVP 60 GGYNVVAHMM NLKPAAPPPR TVAAPPPIPN GSAPSAVKTR ICNKFNTAEG CKFGDKCHFA 120 HGEWELGKPI APSIDDHHHH RPLGPPAGGR MAGRIEPPPA MAGSFGAIST AKISVEASLA 180 GAIIGKGGVN SKQICRQTGA KLSIREHESD PNLRNIELEG TFEQIKEASN MVKDLLLTVS 240 MSAPPKSTPG VPGAPAPPGS NFKTKLCENF AKGSCTFGER CHFAHGAAEL RKSGV* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.54781 | 0.0 | hypocotyl| leaf| root| seed coat |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.02G173900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT094310 | 0.0 | BT094310.1 Soybean clone JCVI-FLGm-18B11 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028209095.1 | 0.0 | zinc finger CCCH domain-containing protein 14-like | ||||
Swissprot | Q7F8R0 | 1e-112 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A0A445LQ69 | 0.0 | A0A445LQ69_GLYSO; Zinc finger CCCH domain-containing protein 14 isoform A | ||||
TrEMBL | I1JG21 | 0.0 | I1JG21_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA02G29360.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1462 | 32 | 102 | Representative plant | OGRP1026 | 17 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 4e-64 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.02G173900.1.p |