PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.02G153700.1.p | ||||||||
Common Name | GLYMA_02G153700, LOC100812475 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C3H | ||||||||
Protein Properties | Length: 472aa MW: 50478.7 Da PI: 8.8837 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33.8 | 5.6e-11 | 50 | 75 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + ++C +++rtG C yG+rC+++H++ Glyma.02G153700.1.p 50 GVPNCVYYMRTGVCGYGGRCRYNHPR 75 6799********************96 PP | |||||||
2 | zf-CCCH | 40.6 | 4.4e-13 | 96 | 120 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ Glyma.02G153700.1.p 96 EPPCQYYLKTGTCKFGASCKFHHPK 120 79*********************96 PP | |||||||
3 | zf-CCCH | 37.1 | 5.4e-12 | 141 | 166 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G +CkF+H++ Glyma.02G153700.1.p 141 GEKECSYYLKTGQCKFGISCKFHHPQ 166 7899********************97 PP | |||||||
4 | zf-CCCH | 35 | 2.4e-11 | 297 | 323 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G C+++H++ Glyma.02G153700.1.p 297 PGEPECQYYLRTGDCKFGLACRYHHPR 323 5799*********************96 PP | |||||||
5 | zf-CCCH | 33.2 | 8.7e-11 | 344 | 366 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C f++++G+Ck+G++CkF H+ Glyma.02G153700.1.p 344 QPCAFYLQNGHCKFGSTCKFDHP 366 69********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.8E-5 | 48 | 75 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.662 | 48 | 76 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.8E-8 | 50 | 75 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.92E-6 | 52 | 77 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.0E-4 | 54 | 75 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.995 | 93 | 121 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-6 | 93 | 120 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-10 | 96 | 120 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.27E-6 | 96 | 121 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-5 | 98 | 119 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.178 | 139 | 167 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-5 | 139 | 166 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-9 | 141 | 166 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.15E-6 | 141 | 167 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-4 | 145 | 165 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.0E-5 | 296 | 323 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.624 | 296 | 324 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.6E-9 | 298 | 323 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.97E-5 | 300 | 324 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.8E-6 | 340 | 367 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.216 | 340 | 368 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-6 | 343 | 371 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.2E-8 | 344 | 366 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.7E-5 | 344 | 366 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 472 aa Download sequence Send to blast |
MDLYGRSPAR NGPNPVNQPE WSSPGTDTAL EESMWHLTLG GGESYPERSG VPNCVYYMRT 60 GVCGYGGRCR YNHPRDRAAV AAAVRATGDY PERVGEPPCQ YYLKTGTCKF GASCKFHHPK 120 NGGGYLSQAP LNVYGYPLRP GEKECSYYLK TGQCKFGISC KFHHPQPAGT SLPASAPQFY 180 QQVQSPTVPL PEQYGGASSS LRVARPPILP GSYVQGAYGP VLLSPGVVQF PGWSHYSAPV 240 SPVPSPGAQP AVGATSLYGV TQLSSPTSAF ARPYTPLPST TDPSRSNPKE QLYPERPGEP 300 ECQYYLRTGD CKFGLACRYH HPRDHIVARP LLSPVGLPLR PGLQPCAFYL QNGHCKFGST 360 CKFDHPLGSM RYSPSASSLI DVPVTPYPVG SLLSQLAPST TSSDLRPELM SGSKKESFSA 420 RIPSSGNSSG TSVGLIFSQG GSVSLSDVQL SSQSNAPPNS SRSTRQSGEI R* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.56455 | 0.0 | flower| hypocotyl |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.02G153700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093745 | 0.0 | BT093745.1 Soybean clone JCVI-FLGm-17P23 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003518955.1 | 0.0 | zinc finger CCCH domain-containing protein 32 isoform X1 | ||||
Refseq | XP_028207352.1 | 0.0 | zinc finger CCCH domain-containing protein 32-like isoform X1 | ||||
Swissprot | Q84W91 | 0.0 | C3H32_ARATH; Zinc finger CCCH domain-containing protein 32 | ||||
TrEMBL | I1JFH1 | 0.0 | I1JFH1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA02G17260.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF983 | 34 | 117 | Representative plant | OGRP2865 | 11 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.3 | 0.0 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.02G153700.1.p |
Entrez Gene | 100812475 |