PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.02G144400.1.p | ||||||||
Common Name | GLYMA_02G144400, LOC100780056 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C2H2 | ||||||||
Protein Properties | Length: 459aa MW: 50942.2 Da PI: 9.0559 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.4 | 1.3e-05 | 73 | 95 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Glyma.02G144400.1.p 73 FVCEICNKGFQRDQNLQLHRRGH 95 89*******************88 PP | |||||||
2 | zf-C2H2 | 12.3 | 0.00051 | 149 | 171 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ Glyma.02G144400.1.p 149 WKCEKCSKIYAVQSDWKAHSKTC 171 58*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.5E-5 | 72 | 95 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.39E-6 | 72 | 95 | No hit | No description |
PROSITE profile | PS50157 | 10.949 | 73 | 95 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.017 | 73 | 95 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12171 | 7.2E-5 | 73 | 95 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 75 | 95 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 170 | 114 | 144 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.9E-4 | 137 | 170 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.39E-6 | 144 | 169 | No hit | No description |
SMART | SM00355 | 170 | 149 | 169 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 459 aa Download sequence Send to blast |
MFPAVMSNSN SLSEEATVSC GTRIAGLNHV ITTTISPEQP LKIKKKRNLP GNPDPDAEVI 60 ALSPKTLLAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LKQRSNKEVK KKAYVCPEPS 120 CVHHNPSRAL GDLTGIKKHY CRKHGEKKWK CEKCSKIYAV QSDWKAHSKT CGTREYRCGC 180 GTLFSRKDNF ITHRAFCDAL AEESARLSAN QLATNTTNPL VQSLFLFPTQ QHNNNFINPW 240 DPNPNPNPNP NPSNLTTLHN NIKPESHNFH IPNTTTTSTA NNNISSSFLH HHQHPNKSMI 300 TSPFRDLHER TQPPSNAATS AHLSATALLQ KAATVGAAAI TGPTHVTQLS MAELGTETTH 360 LDSVPLPPDQ RYMSMRGINS NNDGLTRDFL GLTNGGAVDV SIDVKDMLTF TAGSVEYNHH 420 HHQQQPYQHH HNNSLFKPQQ GFGFLGTTTG PEYWGNCE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-34 | 145 | 209 | 3 | 67 | Zinc finger protein JACKDAW |
5b3h_F | 1e-34 | 145 | 209 | 3 | 67 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.19174 | 1e-175 | leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.02G144400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003520199.1 | 0.0 | protein indeterminate-domain 12 | ||||
Refseq | XP_028206312.1 | 0.0 | protein indeterminate-domain 12-like | ||||
Swissprot | O22759 | 1e-117 | IDD12_ARATH; Protein indeterminate-domain 12 | ||||
TrEMBL | A0A445LNZ5 | 0.0 | A0A445LNZ5_GLYSO; Protein indeterminate-domain 12 | ||||
TrEMBL | I1JF70 | 0.0 | I1JF70_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA02G16280.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF181 | 34 | 275 | Representative plant | OGRP95 | 16 | 242 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02670.1 | 1e-113 | indeterminate(ID)-domain 12 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.02G144400.1.p |
Entrez Gene | 100780056 |
Publications ? help Back to Top | |||
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