PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.02G141000.7.p | ||||||||
Common Name | GLYMA_02G141000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 356aa MW: 40088.3 Da PI: 10.271 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99.2 | 2.6e-31 | 289 | 347 | 3 | 60 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ e+p+++++tYegeHnh+k Glyma.02G141000.7.p 289 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPTMLIVTYEGEHNHPK 347 99***********************9988****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 5.1E-17 | 240 | 285 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 2.0E-33 | 275 | 347 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.998 | 282 | 348 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.23E-27 | 285 | 347 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.7E-38 | 287 | 347 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.5E-27 | 289 | 346 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MEEVEQANRV AVESCHRVLS LLSQPRDQVQ HRNLMVETGE AVVRFKKVVS LLHSGMGHAR 60 VRKVKNPQIP FSHQSIFLDN PNCKTINNHH FKNLQFPQTS FPDNSIQELG STIKNSLSLG 120 QPSLELSSNG KSPLHLTQQA SSNHYHFFQQ QQQQQQQRLL LQQQQQQQQQ MKHQAEMMFR 180 RNNSGINLNF DSTSCTPTMS STRSFISSLS IDGSVANLDG SAFHLIGAPH SSDQNSQQHK 240 RKCSARGDEG SLKCGSSARC HCSKKRKHRV KRAIKVPAIS NKLADIPPDD YSWRKYGQKP 300 IKGSPHPRGY YKCSSMRGCP ARKHVERCLE EPTMLIVTYE GEHNHPKLPT QSANA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-20 | 283 | 349 | 10 | 75 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.15748 | 0.0 | pod| root| seed coat| somatic embryo| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00284 | DAP | Transfer from AT2G30590 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.02G141000.7.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU375352 | 0.0 | EU375352.1 Glycine max transcription factor (WRKY22) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001237604.2 | 0.0 | WRKY transcription factor 22 | ||||
Refseq | XP_028205918.1 | 0.0 | probable WRKY transcription factor 21 | ||||
Swissprot | O04336 | 1e-127 | WRK21_ARATH; Probable WRKY transcription factor 21 | ||||
TrEMBL | A0A0B2RD39 | 0.0 | A0A0B2RD39_GLYSO; Putative WRKY transcription factor 21 | ||||
TrEMBL | A0A0R0KWS7 | 0.0 | A0A0R0KWS7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA02G15920.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30590.1 | 1e-119 | WRKY DNA-binding protein 21 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.02G141000.7.p |