PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.02G135400.1.p | ||||||||
Common Name | GLYMA_02G135400, LOC100806237 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | G2-like | ||||||||
Protein Properties | Length: 415aa MW: 45964 Da PI: 6.6829 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 103.4 | 1.4e-32 | 272 | 327 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a+++LGGs++AtPk+i+elm+v+gLt+++vkSHLQkYRl+ Glyma.02G135400.1.p 272 KQRRCWSPELHRRFVNALQKLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLH 327 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.461 | 269 | 329 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.59E-18 | 269 | 330 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.2E-29 | 270 | 330 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.8E-27 | 272 | 327 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.2E-8 | 274 | 325 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 415 aa Download sequence Send to blast |
MGSVPAELSL DLRPTFIPKT ITDFLRHLSD NNNPPATLHD FLARLEDELR KIHAFKRELP 60 LSMLLLNDAI SVLKAESQKC RVARDSAPVL EEFIPLKKER GDQSEEEEEE EENDDDDDNE 120 CRDKRNWMSS VQLWNNNTTT ATTNNNNPSD RKQLLHKLQT KKSEEGQSVV EDPFQTCSNI 180 NEGRRAFMPF SRYSSSSSSV PVTTVGLGAA ASKEEKEESV MNRLSLLTPS SVKEGCGSRG 240 SRSSSNRAVS SSSPPMVQPS LRATSLQQTA RKQRRCWSPE LHRRFVNALQ KLGGSQVATP 300 KQIRELMQVD GLTNDEVKSH LQKYRLHTRR VPAASSNQPV VVLGGLWMSQ DQYNDSSKVS 360 SSGSGSPQSP LHLAAGSRGG TSPTEGDSME DDEDARSESF SWKSHMHKAG KVDV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-13 | 272 | 325 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-13 | 272 | 325 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 1e-13 | 272 | 325 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-13 | 272 | 325 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-13 | 272 | 325 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-13 | 272 | 325 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-13 | 272 | 325 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-13 | 272 | 325 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-13 | 272 | 325 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-13 | 272 | 325 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-13 | 272 | 325 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-13 | 272 | 325 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.53047 | 0.0 | flower| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.02G135400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT096377 | 0.0 | BT096377.1 Soybean clone JCVI-FLGm-15D9 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003518860.1 | 0.0 | transcription factor HHO5 | ||||
Refseq | XP_028205232.1 | 0.0 | transcription factor HHO5-like | ||||
TrEMBL | A0A0B2RZ42 | 0.0 | A0A0B2RZ42_GLYSO; Myb family transcription factor EFM isoform A | ||||
TrEMBL | I1JEX5 | 0.0 | I1JEX5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA02G15320.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1208 | 34 | 107 | Representative plant | OGRP2563 | 11 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03500.1 | 1e-51 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.02G135400.1.p |
Entrez Gene | 100806237 |