PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G132500.1.p
Common NameGLYMA_02G132500, LOC100794381
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 216aa    MW: 23840.5 Da    PI: 4.9258
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G132500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.97e-2087137155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          ++y+GVr+++ +g+W+AeIrd       r +r++lg+f tae+Aa+a+++a  +l+g
  Glyma.02G132500.1.p  87 KKYRGVRQRP-SGKWAAEIRDrH-----RsARVWLGTFETAEDAARAYDKASFELRG 137
                          59********.7*********44.....35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.15E-3287145No hitNo description
PfamPF008472.2E-1488137IPR001471AP2/ERF domain
SMARTSM003802.8E-3588151IPR001471AP2/ERF domain
PROSITE profilePS5103223.14388145IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-3188146IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-2188146IPR016177DNA-binding domain
PRINTSPR003672.0E-1089100IPR001471AP2/ERF domain
PRINTSPR003672.0E-10111127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MSSSSSSFFP AHITTDQEFS LIVAALTNVV SGSTSSSSVP EFRFPHSSPP LSAASLMPPP  60
LPSIHTCREC NIAGCLGCNF FPEEQRKKYR GVRQRPSGKW AAEIRDRHRS ARVWLGTFET  120
AEDAARAYDK ASFELRGPRA KLNFPLVDES LTLQPEMAAT EEQINNEDNL NQGMGMDSHE  180
FWDRINEADF HPFMMMMDFT GDSSDSAATG YTLSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2387146161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.67546e-59flower| meristem| root| seed coat
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G132500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003518839.21e-159ethylene-responsive transcription factor ERF109
RefseqXP_028186364.11e-159ethylene-responsive transcription factor ERF109-like
SwissprotQ9SZ062e-28EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLA0A445LNM71e-159A0A445LNM7_GLYSO; Ethylene-responsive transcription factor ERF109
TrEMBLI1JEU31e-159I1JEU3_SOYBN; Uncharacterized protein
STRINGGLYMA02G14940.11e-160(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29623072
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.17e-27ERF family protein
Publications ? help Back to Top
  1. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  2. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  3. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  4. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  5. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]