PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G125200.3.p
Common NameGLYMA_02G125200, LOC100783810
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 518aa    MW: 55592.6 Da    PI: 6.4108
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G125200.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.36.3e-09367415355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Glyma.02G125200.3.p 367 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 415
                          58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.54E-17362433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.83E-11362419No hitNo description
PROSITE profilePS5088815.485364414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-16365431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-6367415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-10370420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MSDKEKFEVD RNEDHVSYSS GMHSDWRFGG SNLANSSVGF VGLGNNSMNV SRGDLIGSSS  60
CSSASMVDSL SPNYWENPTS SQKLGFCDIN NVHNNGGSSS TVAIRKDGFG FGRVGQDHHG  120
TLEMGWNHAN SMLPNGPVMF PHSLSQFPTD SGFIERAARF SCFSGGNFGD MVNSYGIAQS  180
MGLYGARDAI AGHGLKSVIA GGQSQGGDMN VVEDVPPSVE HLVAAKGSPL KSDRRSEGHV  240
IFQDEGKQSL VRNANESDRA ESSDDGGGQD DSPMLEGTSG EPSSKGLNSK KRKRSGRDGD  300
NDKANGAQEL PSEGAKGNSE NQQKGDQQPI STANKACGKN AKLGSQASDP PKEEYIHVRA  360
RRGQATNSHS LAERVRREKI SERMKFLQDL VPGCSKVTGK AVMLDEIINY VQSLQRQVEF  420
LSMKLATVNP RLDFNIEGLL AKDILQQRPD PSTALGFPLD MSMAFPPLHP PQPGLIHPVI  480
PNMTNSSDIL QRTIHPQLAP LNGGFKEPNQ IAAHEEC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1289294KKRKRS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.353830.0cotyledon| leaf| pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G125200.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006574976.10.0transcription factor bHLH49 isoform X2
RefseqXP_028204221.10.0transcription factor bHLH49-like isoform X2
TrEMBLA0A0R0L1T40.0A0A0R0L1T4_SOYBN; Uncharacterized protein
STRINGGLYMA02G13860.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-105bHLH family protein