PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G124300.1.p
Common NameGLYMA_02G124300, LOC100781670
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 314aa    MW: 35306.4 Da    PI: 6.037
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G124300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.72.7e-181461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd++l+d ++++G  +W++ ++  g++R++k+c++rw +yl
  Glyma.02G124300.1.p 14 KGPWTPEEDQKLIDHIQKHGHASWRALPKLAGLNRCGKSCRLRWTNYL 61
                         79********************************************97 PP
2Myb_DNA-binding57.92.4e-1867112148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++++eE++ ++d+++ lG++ W++Ia++++ gRt++++k++w+++l
  Glyma.02G124300.1.p  67 RGKFSQEEEQTILDLHAILGNK-WSAIASHLP-GRTDNEIKNFWNTHL 112
                          89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-25564IPR009057Homeodomain-like
PROSITE profilePS5129417.168961IPR017930Myb domain
SuperFamilySSF466891.8E-3111108IPR009057Homeodomain-like
SMARTSM007176.1E-151363IPR001005SANT/Myb domain
PfamPF002495.7E-171461IPR001005SANT/Myb domain
CDDcd001671.17E-111661No hitNo description
PROSITE profilePS5129427.11362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-2865117IPR009057Homeodomain-like
SMARTSM007171.7E-1766114IPR001005SANT/Myb domain
PfamPF002496.7E-1767112IPR001005SANT/Myb domain
CDDcd001679.97E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MGRSPCCDEI GLKKGPWTPE EDQKLIDHIQ KHGHASWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SQEEEQTILD LHAILGNKWS AIASHLPGRT DNEIKNFWNT HLKKKLIQMG  120
YDPMTHQPRI DDIFTGLSHL IALANLKELL DQPLEQNLAR LQELAKLQCL QQHLLQPQAS  180
LNIDADPNYT INSTINSTFM MNKGTINVSN DQFENIIMSS NCTMPFSDMP ELKTPPSCSY  240
EAPLSNKDMI QLSQGEIYPD SPWLLSCSST TPSSPSSLVA PPVTEVSLST NVEDNCTIWP  300
ELLLEDPLFK MIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-30121165108B-MYB
1h8a_C2e-301211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in roots and at lower levels in stems, flowers and siliques. {ECO:0000269|PubMed:24902892}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G124300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150432e-69AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003520138.10.0transcription factor MYB92
RefseqXP_028204092.10.0transcription factor MYB92-like
SwissprotQ9SBF33e-98MYB92_ARATH; Transcription factor MYB92
TrEMBLA0A445LN400.0A0A445LN40_GLYSO; Transcription factor MYB92
TrEMBLI1JEL40.0I1JEL4_SOYBN; Uncharacterized protein
STRINGGLYMA02G13770.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.13e-93myb domain protein 93
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]