PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.02G121600.1.p | ||||||||
Common Name | GLYMA_02G121600, LOC100811588 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 244aa MW: 28176.1 Da PI: 8.5651 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 96.3 | 1.3e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+iifs++gkl+ey++ Glyma.02G121600.1.p 9 KRIENKINRQVTFSKRRGGLLKKAHEISVLCDAEVALIIFSHKGKLFEYAT 59 79***********************************************86 PP | |||||||
2 | K-box | 107.2 | 1.8e-35 | 75 | 174 | 1 | 100 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 y++++ ++++++++e+++ e+++Lk++i+ Lqr++Rh++GedL s+slkeLq+LeqqL +++k+iR+++n+l+ e+i+elqkkek++qee Glyma.02G121600.1.p 75 YAERQLVANDSETQENWTIEYTRLKAKIDLLQRNHRHYMGEDLASMSLKELQSLEQQLVTGIKNIRTRRNDLMSESISELQKKEKRIQEE 164 5677888889999***************************************************************************** PP K-box 91 nkaLrkklee 100 n++L kk++e Glyma.02G121600.1.p 165 NNTLAKKIKE 174 *******987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.31 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.3E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-33 | 2 | 93 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.96E-40 | 2 | 79 | No hit | No description |
PRINTS | PR00404 | 3.0E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 7.7E-30 | 84 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 17.06 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MGRGRVQLKR IENKINRQVT FSKRRGGLLK KAHEISVLCD AEVALIIFSH KGKLFEYATD 60 SCMEKILERH ERYAYAERQL VANDSETQEN WTIEYTRLKA KIDLLQRNHR HYMGEDLASM 120 SLKELQSLEQ QLVTGIKNIR TRRNDLMSES ISELQKKEKR IQEENNTLAK KIKEKEQAVA 180 QQAAQWEQPN YRVDTSFMPQ QQPLPTSLNI CGNNYCQEAA PELGRNGLDL TLEPLYSCNL 240 GCF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 3e-21 | 1 | 73 | 1 | 72 | MEF2C |
5f28_B | 3e-21 | 1 | 73 | 1 | 72 | MEF2C |
5f28_C | 3e-21 | 1 | 73 | 1 | 72 | MEF2C |
5f28_D | 3e-21 | 1 | 73 | 1 | 72 | MEF2C |
6byy_A | 4e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 4e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 4e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 4e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_A | 4e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 4e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 4e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 4e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in tendrils and flowers. {ECO:0000269|PubMed:15247405}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.02G121600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT095362 | 0.0 | BT095362.1 Soybean clone JCVI-FLGm-14L12 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006574961.1 | 0.0 | truncated transcription factor CAULIFLOWER A | ||||
Swissprot | Q6E6S7 | 1e-115 | AP1_VITVI; Agamous-like MADS-box protein AP1 | ||||
TrEMBL | I1JEI8 | 0.0 | I1JEI8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA02G13420.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF588 | 32 | 119 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69120.1 | 2e-94 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.02G121600.1.p |
Entrez Gene | 100811588 |
Publications ? help Back to Top | |||
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