PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.02G121300.1.p | ||||||||
Common Name | GLYMA_02G121300, LOC100820149 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | SBP | ||||||||
Protein Properties | Length: 483aa MW: 54008.3 Da PI: 7.1199 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 134.3 | 4e-42 | 180 | 256 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv gC++dls+ k+yh+rhkvC++hsk+++v+v+g+eqrfCqqCsrfh l efD++krsCrrrLa+hnerrrk+q Glyma.02G121300.1.p 180 VCQVYGCNMDLSSSKDYHKRHKVCDAHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRRRLAGHNERRRKPQ 256 6**************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.2E-34 | 175 | 242 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.753 | 178 | 255 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 9.55E-40 | 179 | 260 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 5.6E-32 | 181 | 254 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 483 aa Download sequence Send to blast |
MESWSYVPEE KGYLFSDEMD FSLDAFMRSR KALVEWDNKS NFVEKDGFNS DREVVRSMEF 60 VDLGFPDLLQ KSFHGSQPLE TSSYELDSNN SSKRGNSSPH VIALDSSMGE EESDSKHLSS 120 LVESKTHDSS LIDLKLGRLA DCKGASSDKV AKEGFTLTSI HPTTLWKRAR TSSLPAQAPV 180 CQVYGCNMDL SSSKDYHKRH KVCDAHSKTA KVIVNGIEQR FCQQCSRFHL LAEFDDGKRS 240 CRRRLAGHNE RRRKPQFDYV TGKQHKILQS YQGTKYLGSS LQNKPQFPFQ DIFQSSILFP 300 GKHAQFSQSG RVKLEEDSIY GSQLAAPVTL DQESSSCALS LLSDQSQYPS CHAAGNPLAS 360 PQVFSGIRIP DRDSRVSKKP LRISPADKLA PNESFPCDTI SKEVIKNRSA ATFSSVGHAL 420 EVHNGDDICQ PSELFSIKHS LSSEHAATVD LFQLSSHLQR VEQQRNSVLV KWENEDYCFP 480 TV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 7e-29 | 172 | 254 | 2 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.11934 | 2e-60 | epicotyl |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 14126564 | 2e-60 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.02G121300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003520128.1 | 0.0 | squamosa promoter-binding-like protein 6 | ||||
Refseq | XP_025981133.1 | 0.0 | squamosa promoter-binding-like protein 6 | ||||
Refseq | XP_025981134.1 | 0.0 | squamosa promoter-binding-like protein 6 | ||||
Refseq | XP_028203744.1 | 0.0 | squamosa promoter-binding-like protein 6 isoform X2 | ||||
TrEMBL | A0A445LN59 | 0.0 | A0A445LN59_GLYSO; Squamosa promoter-binding-like protein 6 isoform A | ||||
TrEMBL | K7K7W5 | 0.0 | K7K7W5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA02G13371.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1819 | 34 | 93 | Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 1e-65 | SBP family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.02G121300.1.p |
Entrez Gene | 100820149 |