PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.02G112100.1.p | ||||||||
Common Name | LOC100799335 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 456aa MW: 49592.6 Da PI: 6.9891 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 103.6 | 1.1e-32 | 175 | 231 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK+vkgsefprsYY+Ct ++Cpvkkkvers +++v+ i+Y+geHnh+ Glyma.02G112100.1.p 175 DDGYNWRKYGQKQVKGSEFPRSYYKCTNPNCPVKKKVERSL-EGHVTAIIYKGEHNHQ 231 8****************************************.***************8 PP | |||||||
2 | WRKY | 106.9 | 1e-33 | 342 | 400 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++dpk+v++tYeg+Hnh+ Glyma.02G112100.1.p 342 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTQGCNVRKHVERASTDPKAVITTYEGKHNHD 400 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.8E-29 | 161 | 233 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.22E-25 | 172 | 233 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.8E-36 | 174 | 232 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.766 | 175 | 233 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.7E-25 | 175 | 231 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.4E-37 | 327 | 402 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.67E-30 | 334 | 402 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 39.18 | 337 | 402 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-39 | 342 | 401 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.8E-26 | 343 | 400 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 456 aa Download sequence Send to blast |
MAGGGGGDRP PWKEAEPPRP TITLPPRSGS MESLFNGGFS PGPMTLLSSF WGDGDDGKSF 60 SQLLAGAMSS PVAGAVAPGV MDSPGLFSSS QVSFGMTHQQ ALAQVSAQAS QANSNMHIQA 120 EHSLTQAPAA ASNTTQQLMP PLTSDSWAAM TESIDHSHSE QRLQSSLLNV DKPADDGYNW 180 RKYGQKQVKG SEFPRSYYKC TNPNCPVKKK VERSLEGHVT AIIYKGEHNH QCPHPNKCSK 240 DTMTSNENSN MQGNVDSTYQ GTSTNSMSKM DPESSQATAD RLSGTSDSEE VADHETEVDE 300 KNVEPEPKRR KAEVSQSDPP SSHRTVTEPR IIVQTTSEVD LLDDGYRWRK YGQKVVKGNP 360 YPRSYYKCTT QGCNVRKHVE RASTDPKAVI TTYEGKHNHD VPAAKTNSHT MASNTASQLK 420 SHNTNPEKHN FGSRGMGGNE QQPVARLQLK EEQIT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 8e-43 | 175 | 403 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 8e-43 | 175 | 403 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.21443 | 0.0 | cotyledon| flower |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.02G112100.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU019557 | 0.0 | EU019557.1 Glycine max WRKY9 (WRKY9) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003520097.1 | 0.0 | probable WRKY transcription factor 4 | ||||
Refseq | XP_028202864.1 | 0.0 | probable WRKY transcription factor 4 | ||||
Swissprot | Q9XI90 | 1e-148 | WRKY4_ARATH; Probable WRKY transcription factor 4 | ||||
TrEMBL | A0A368UIH3 | 0.0 | A0A368UIH3_SOYBN; Uncharacterized protein | ||||
TrEMBL | A0A445LMF8 | 0.0 | A0A445LMF8_GLYSO; Putative WRKY transcription factor 4 | ||||
STRING | GLYMA02G12490.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1545 | 34 | 100 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13960.1 | 1e-140 | WRKY DNA-binding protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.02G112100.1.p |
Entrez Gene | 100799335 |
Publications ? help Back to Top | |||
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