PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.02G110200.1.p | ||||||||
Common Name | GLYMA_02G110200, LOC100792994 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 430aa MW: 48605.2 Da PI: 6.4502 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.2 | 7.7e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ ++++G g+W++ +++ g++R++k+c++rw +yl Glyma.02G110200.1.p 14 KGPWTPEEDQKLIAFIEKHGHGSWRALPAKAGLRRCGKSCRLRWSNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.9 | 8.3e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ W++Ia++++ +Rt++++k++w+++l Glyma.02G110200.1.p 67 RGKFSLQEEQTIIQLHALLGNR-WSAIASHLP-KRTDNEIKNYWNTHL 112 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-25 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.429 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.17E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.5E-15 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.47E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.622 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-26 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.8E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-16 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.84E-11 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 430 aa Download sequence Send to blast |
MGRSPCCEKT GLKKGPWTPE EDQKLIAFIE KHGHGSWRAL PAKAGLRRCG KSCRLRWSNY 60 LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIASHLPKRT DNEIKNYWNT HLKKRLDKMG 120 IDPTTHKPKN ESLAYSKDGS NLGHMAQWES ARLEAEARLV RESKLQEQQN NLGPMSSPSS 180 TQITRLVLNK ITPLQQKQHS LPPCLDVLKA WQSSWSNNNN NINKYSSLND KKKTMHVRSM 240 YAMMLSNDDL ESPTSTLCFP ESVQMNNNNN NSNAMVSTNH LGLINENYLL PPTTLDEFII 300 TKSLGTTSSE GAIETVNGGG SDSWRYFTKH NNEEEQVETD EKTIMYDTIS CLQDDDGDIM 360 VAVEALRGAG YYDDDNNSNN NNVTFTHLSS NVNNMVGFEN DFDSNEDLAA VNLHVNFEEN 420 KDYWNGMLN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-28 | 12 | 117 | 5 | 109 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.02G110200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003520088.1 | 0.0 | transcription factor MYB106 | ||||
TrEMBL | K7K7P1 | 0.0 | K7K7P1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA02G12266.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF835 | 34 | 127 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15310.2 | 1e-103 | myb domain protein 16 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.02G110200.1.p |
Entrez Gene | 100792994 |