PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G110100.1.p
Common NameGLYMA_02G110100, LOC100792464
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 321aa    MW: 36222.8 Da    PI: 7.8427
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G110100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.81.4e-191461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT eEd++lv +v+++G ++W++++++ g+ R++k+c++rw +yl
  Glyma.02G110100.1.p 14 KGPWTSEEDKKLVAYVEKHGHRNWRSVPAKAGLERCGKSCRLRWINYL 61
                         79********************************************97 PP
2Myb_DNA-binding50.83.9e-1667110146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg++T eEd  +++++++lG++ W+ Ia++++ +Rt++++k++w++
  Glyma.02G110100.1.p  67 RGNFTMEEDHTIIQLHALLGNK-WSIIAAHLP-KRTDNEIKNYWNT 110
                          89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.2E-26564IPR009057Homeodomain-like
PROSITE profilePS5129425.83965IPR017930Myb domain
SuperFamilySSF466891.69E-3211108IPR009057Homeodomain-like
SMARTSM007173.7E-151363IPR001005SANT/Myb domain
PfamPF002491.6E-171461IPR001005SANT/Myb domain
CDDcd001673.95E-121661No hitNo description
Gene3DG3DSA:1.10.10.607.8E-2665117IPR009057Homeodomain-like
SMARTSM007179.4E-1466114IPR001005SANT/Myb domain
PROSITE profilePS5129420.2366116IPR017930Myb domain
PfamPF002493.7E-1567110IPR001005SANT/Myb domain
CDDcd001671.62E-969112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MGRIPCCEKV GLKKGPWTSE EDKKLVAYVE KHGHRNWRSV PAKAGLERCG KSCRLRWINY  60
LKPDIKRGNF TMEEDHTIIQ LHALLGNKWS IIAAHLPKRT DNEIKNYWNT NVKKRLIRMG  120
LDPITHKPIK TNTFEAYGGG HGQSEDNINM NHMAQWESAR IEAEARGSVF QAGSHSSHQP  180
QLILSKIPTQ PCFSSSDSLS TKRNTVYNMY ALVLATNHDP VLPVSTLSIP YWQTPSPVST  240
NIGRFTDTGS SLSYEENVNI TETSCQTQKI IEDYMLNSQD DDIIVAVEAF RTTRCESIQE  300
LFRGSNDVEG PNNDSFERNV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28121165108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in trichomes, stems, carpels, petals and stamens. {ECO:0000269|PubMed:18805951}.
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G110100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150433e-40AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003520087.10.0transcription factor MYB106
SwissprotQ9LE632e-86MY106_ARATH; Transcription factor MYB106
TrEMBLK7K7N90.0K7K7N9_SOYBN; Uncharacterized protein
STRINGGLYMA02G12254.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13536826
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.17e-86myb domain protein 106