PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G110000.1.p
Common NameGLYMA_02G110000, LOC100790887
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 303aa    MW: 33882.6 Da    PI: 7.1379
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G110000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding63.73.7e-201461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd++lv +v+++G+g+W++++++ g+ R++k+c++rw +yl
  Glyma.02G110000.1.p 14 KGPWTPEEDKKLVAYVEEHGPGNWRSVPAKAGLERCGKSCRLRWINYL 61
                         79********************************************97 PP
2Myb_DNA-binding50.74.2e-1667110146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+++ eEd  +++++++lG++ W+ Ia++++ +Rt++++k++w++
  Glyma.02G110000.1.p  67 RGNFSMEEDHTIIQLHALLGNK-WSIIAAHLP-NRTDNEIKNYWNT 110
                          89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-26564IPR009057Homeodomain-like
PROSITE profilePS5129427.402965IPR017930Myb domain
SuperFamilySSF466893.52E-3311108IPR009057Homeodomain-like
SMARTSM007173.1E-161363IPR001005SANT/Myb domain
PfamPF002491.2E-181461IPR001005SANT/Myb domain
CDDcd001676.77E-131661No hitNo description
Gene3DG3DSA:1.10.10.607.1E-2665117IPR009057Homeodomain-like
PROSITE profilePS5129420.52266116IPR017930Myb domain
SMARTSM007179.3E-1466114IPR001005SANT/Myb domain
PfamPF002493.3E-1567110IPR001005SANT/Myb domain
CDDcd001672.59E-969112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MGRMPCCEKV GLKKGPWTPE EDKKLVAYVE EHGPGNWRSV PAKAGLERCG KSCRLRWINY  60
LKPDIKRGNF SMEEDHTIIQ LHALLGNKWS IIAAHLPNRT DNEIKNYWNT NIKKRLIRMG  120
LDPITHKPIK SNSFEAYDEF KDTTNMGHVA QWESARLEAE ARGSILQVGS GSSNLPRLNL  180
SKIPTQPCSS SYSISNEHMT AYNMYALVLA TNYDLQSSVS TLSVPKLPEV CTIIGKFANA  240
ESLLSYKNDD NVVEISSQIQ KVVEGSVSNL QDDDIMMAVE AFRTAKCESI QELFNESAVE  300
KV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-29121162105MYB PROTO-ONCOGENE PROTEIN
1h88_C2e-281211656159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-281211656159MYB PROTO-ONCOGENE PROTEIN
1h8a_C8e-291211625128MYB TRANSFORMING PROTEIN
1mse_C4e-29121162105C-Myb DNA-Binding Domain
1msf_C4e-29121162105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in trichomes, stems, carpels, petals and stamens. {ECO:0000269|PubMed:18805951}.
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G110000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014621940.10.0transcription factor MYB106
SwissprotQ9LE631e-86MY106_ARATH; Transcription factor MYB106
TrEMBLK7K7N80.0K7K7N8_SOYBN; Uncharacterized protein
STRINGGLYMA02G12242.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13536826
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.17e-89myb domain protein 16