PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G109800.1.p
Common NameGLYMA_02G109800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 280aa    MW: 32055.4 Da    PI: 9.2396
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G109800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.41.6e-5491341128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeel+v+yL+++++++++++ ++i+evdiyk++Pw+Lp+k++ +ekewyfFs+r++ky++g r+nrat sgyWkatg+dk
  Glyma.02G109800.1.p   9 LPPGFRFHPTDEELIVYYLCNQATSRPCPA-SIIPEVDIYKFDPWELPEKTDFGEKEWYFFSPRERKYPNGVRPNRATVSGYWKATGTDK 97 
                          79****************************.89***************99999************************************* PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++s ++++vg+kk Lvfykg+ pkg ktdW+mheyrl
  Glyma.02G109800.1.p  98 AIYS-GSKHVGVKKALVFYKGKPPKGLKTDWIMHEYRL 134
                          ****.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.49E-665161IPR003441NAC domain
PROSITE profilePS5100560.7379161IPR003441NAC domain
PfamPF023651.5E-2610134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0009835Biological Processfruit ripening
GO:0009908Biological Processflower development
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MENRTSSVLP PGFRFHPTDE ELIVYYLCNQ ATSRPCPASI IPEVDIYKFD PWELPEKTDF  60
GEKEWYFFSP RERKYPNGVR PNRATVSGYW KATGTDKAIY SGSKHVGVKK ALVFYKGKPP  120
KGLKTDWIMH EYRLIGSRRQ ANRQVGSMRL DDWVLCRIYK KKNIGKSMEA KEEYPIAQIN  180
LTPANNDSEQ EMVKFPRTSS LTHLLEMDYL GPISHILSDA TYNSTFDFQI NTANGGIDPF  240
VKPQPVEIPY AADSGKYQVK QNSTINPTIF VNQVYYQRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-72516313167NO APICAL MERISTEM PROTEIN
1ut4_B1e-72516313167NO APICAL MERISTEM PROTEIN
1ut7_A1e-72516313167NO APICAL MERISTEM PROTEIN
1ut7_B1e-72516313167NO APICAL MERISTEM PROTEIN
3swm_A1e-72516316170NAC domain-containing protein 19
3swm_B1e-72516316170NAC domain-containing protein 19
3swm_C1e-72516316170NAC domain-containing protein 19
3swm_D1e-72516316170NAC domain-containing protein 19
3swp_A1e-72516316170NAC domain-containing protein 19
3swp_B1e-72516316170NAC domain-containing protein 19
3swp_C1e-72516316170NAC domain-containing protein 19
3swp_D1e-72516316170NAC domain-containing protein 19
4dul_A1e-72516313167NAC domain-containing protein 19
4dul_B1e-72516313167NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.266280.0cotyledon| flower| hypocotyl| leaf| root| stem| vegetative bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stem, flowers, and leaves. {ECO:0000269|PubMed:29760199}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269|PubMed:29760199}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00221DAPTransfer from AT1G69490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G109800.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269|PubMed:29760199}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6619230.0EU661923.1 Glycine max NAC domain protein (NAC26) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028202582.10.0NAC domain-containing protein 2-like
SwissprotK4BNG71e-115NAP2_SOLLC; NAC domain-containing protein 2
TrEMBLA0A0B2Q3A20.0A0A0B2Q3A2_GLYSO; NAC domain-containing protein 29
TrEMBLA0A0R4J2P40.0A0A0R4J2P4_SOYBN; Uncharacterized protein
STRINGGLYMA02G12220.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41033262
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-115NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Ma X, et al.
    The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.
    Plant Physiol., 2018. 177(3): p. 1286-1302
    [PMID:29760199]