PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.02G108800.1.p | ||||||||
Common Name | GLYMA_02G108800, LOC100789305 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 468aa MW: 52031.4 Da PI: 7.1696 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.1 | 1.5e-16 | 139 | 184 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+++G+ +W++Ia+++ gR++k+c++rw++ Glyma.02G108800.1.p 139 RGHWRPAEDSKLKELVALHGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 184 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 55.4 | 1.4e-17 | 191 | 234 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eE+e+l +a++ +G++ W+ Iar ++ gRt++ +k++w+ Glyma.02G108800.1.p 191 RRAFSEEEEERLMQAHRIYGNK-WAMIARLFP-GRTDNAVKNHWHV 234 678*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.222 | 134 | 185 | IPR017930 | Myb domain |
SMART | SM00717 | 3.0E-14 | 138 | 187 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.09E-27 | 139 | 232 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.9E-16 | 139 | 184 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-25 | 140 | 192 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.89E-13 | 142 | 183 | No hit | No description |
PROSITE profile | PS51294 | 26.929 | 186 | 240 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-14 | 190 | 238 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-14 | 191 | 233 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.16E-11 | 193 | 233 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-20 | 193 | 239 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 468 aa Download sequence Send to blast |
MASSKCCMIS PQQNQNAPTC YPSPMGMVYA DMMGSLSLAT VSNNASSSQE SNGYSYGYAS 60 GVENARSTRW SFPFTREFLS SNFEDCSDVV VGAGDSNNNI NEKTNHNNGK FSEEESNPNE 120 NNPAGGKEVD SGHSKLCARG HWRPAEDSKL KELVALHGPQ NWNLIAEKLE GRSGKSCRLR 180 WFNQLDPRIN RRAFSEEEEE RLMQAHRIYG NKWAMIARLF PGRTDNAVKN HWHVIMARKY 240 REQSSAYRRR RMSQPVYRRV DQNPTFVCSS RDNNASTTEP EPESSPSYYP NLNDRGVALT 300 NNMASFPSLH GVAAGAGGVV EFGSNVSPLN MTRGREAVSN TTHVGLCAQA QQQAPFDFFS 360 GGGSHDMVLE SMSQMRSRER TNESYNHHCQ LSGFYPHHPQ QYLMAMQQQL DNNNFYSFLN 420 SSSSASTTRT REPSSPCVAE IRDKVVNSDP PDGVPPPFFD FFGVGAT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-33 | 139 | 239 | 7 | 107 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.02G108800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003520083.1 | 0.0 | transcription factor CSA | ||||
TrEMBL | K7K7M3 | 0.0 | K7K7M3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA02G12105.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF230 | 34 | 243 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 2e-75 | myb domain protein 105 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.02G108800.1.p |
Entrez Gene | 100789305 |