PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G108500.1.p
Common NameGLYMA_02G108500, LOC100787178
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 352aa    MW: 39186.2 Da    PI: 6.1877
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G108500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.44.9e-312074155
              G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                         kprl+WtpeLH+rF+ea +qLGG++kAtPk+++++m+++gLtl+h+kSHLQk+Rl
  Glyma.02G108500.1.p 20 KPRLKWTPELHRRFIEATNQLGGEDKATPKSLMRVMGIPGLTLYHLKSHLQKFRL 74
                         79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.7E-291876IPR009057Homeodomain-like
SuperFamilySSF466894.12E-161975IPR009057Homeodomain-like
TIGRFAMsTIGR015579.4E-222075IPR006447Myb domain, plants
PfamPF002491.1E-62272IPR001005SANT/Myb domain
PfamPF143791.8E-21118164IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MDPQNMQNQT MHFVLSTDSK PRLKWTPELH RRFIEATNQL GGEDKATPKS LMRVMGIPGL  60
TLYHLKSHLQ KFRLGKSQQL ETCSDNKQED YIETKSSSDG HCSREISLGA QNQITENMQI  120
AQALQMQMEV QRKLYEQIEV QKHLQLRIEA QGKYLQSVLK KAQEALAGYN SSPVGIELTK  180
AELSQLVTII NDACPSSPIS ELTETRGLSL SCGERKRDRG TMCSLESSLT SSESSGRKEE  240
KQPMEEIVEF KSSNNVSFEL PLMEIHTEDK ASNGGLSSNE GSGRKRSLAA TESDDGSCVV  300
EQPCGKRCGN KLLRKVKLSE MLDLNSQCQS DMDSTGSKTL DLNCSLNFWE P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-192076258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-192076258Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-192076157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-192076157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-192076157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-192076157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-192076258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-192076258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-192076258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-192076258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-192076258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-192076258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.393970.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G108500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2353790.0AC235379.1 Glycine max strain Williams 82 clone GM_WBb0110B11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003520080.10.0myb family transcription factor PHL8 isoform X1
RefseqXP_028202441.10.0myb family transcription factor PHL8-like isoform X1
SwissprotF4I2744e-77PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLI1JE550.0I1JE55_SOYBN; Uncharacterized protein
STRINGGLYMA02G12070.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52183253
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.16e-77G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]