PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.02G093900.2.p

Common Name

GLYMA_02G093900

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

WOX

Protein Properties

Length: 263aa MW: 29686.3 Da PI: 6.2534

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.02G093900.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.9	2.3e-20	86	146	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + +p++e+++e++++l +++e++V++WFqNrRa+ k+ Glyma.02G093900.2.p 86 RQRWTPTAMQLQILERIFDQgIGTPTKEKIKEITNELsqhgQISETNVYNWFQNRRARSKR 146 89***************99************************************97 PP
2	Wus_type_Homeobox	103.3	1.6e-33	85	148	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtPt+ Q++iLe+++++G+ tP+ke+i++it+eL+++G+i+++NV++WFQNr+aR+++kq Glyma.02G093900.2.p 85 SRQRWTPTAMQLQILERIFDQGIGTPTKEKIKEITNELSQHGQISETNVYNWFQNRRARSKRKQ 148 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	14.673	82	147	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	7.7E-17	82	151	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.58E-17	84	149	IPR009057	Homeodomain-like
SMART	SM00389	4.0E-13	84	151	IPR001356	Homeobox domain
CDD	cd00086	1.44E-12	86	148	No hit	No description
Pfam	PF00046	4.3E-18	86	146	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MVNAMEWQKQ RCWQPNRNAE MMCVKVMTDE QLEILRKQIA VYATICEQLI EMHKNISAHQ 60 DLAGIRLGNM YCDPLLGSGG LKIASRQRWT PTAMQLQILE RIFDQGIGTP TKEKIKEITN 120 ELSQHGQISE TNVYNWFQNR RARSKRKQQN VAPSANAESE VETEVDSKDK KTKPDEFQAP 180 PSVSAGPADN LGFQNHDSLQ YLNPESNKPD SVFPSDGTRN FHHVPAFDGL LSNSRSNYLT 240 GKLETPENYE LYQPAGDYNI AG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	147	RRARSKRKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.39662	0.0	hypocotyl\| leaf\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.02G093900.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT092189	0.0	BT092189.1 Soybean clone JCVI-FLGm-10E18 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014618603.1	0.0	homeobox domain-containing protein isoform X1
Refseq	XP_028201181.1	0.0	WUSCHEL-related homeobox 8-like isoform X2
Swissprot	O81788	8e-73	WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBL	A0A445LM00	0.0	A0A445LM00_GLYSO; WUSCHEL-related homeobox 13 isoform H
TrEMBL	I1JDQ8	0.0	I1JDQ8_SOYBN; Uncharacterized protein
STRING	GLYMA02G10410.3	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	3e-75	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	Glyma.02G093900.2.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605]