PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G085900.1.p
Common NameGLYMA_02G085900, LOC100817125
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARR-B
Protein Properties Length: 634aa    MW: 69759.6 Da    PI: 6.727
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G085900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.94.7e-28198251155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          kpr++W+ eLH++Fv+av+qL G +kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  Glyma.02G085900.1.p 198 KPRVVWSVELHQQFVSAVNQL-GLDKAVPKRILELMNVPGLTRENVASHLQKFRL 251
                          79*******************.********************************8 PP
2Response_reg74.83.2e-25161241109
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          vl+vdD+ + +++++q+  + +y +v+++++++ al+ll+e++  +D++l D+ mp+mdG++ll++   e  +lp+i++++ ++ + + +
  Glyma.02G085900.1.p  16 VLVVDDDATTLKIIEQMSIRCRY-RVTTCTEATVALNLLRERKgcFDVVLSDVHMPDMDGYKLLEHVGLEM-DLPVIMMSGDSTTSAVMK 103
                          89*********************.*******************************************6644.8***************** PP

                          HHHTTESEEEESS--HHHHHH CS
         Response_reg  89 alkaGakdflsKpfdpeelvk 109
                           ++ Ga d+l Kp+ +eel++
  Glyma.02G085900.1.p 104 GIRHGACDYLIKPVREEELRN 124
                          *******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363926.9E-1533614IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23003.5E-3913148No hitNo description
SuperFamilySSF521722.56E-3313135IPR011006CheY-like superfamily
SMARTSM004486.8E-2914126IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011040.49315130IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.4E-2116125IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.14E-2517129No hitNo description
SuperFamilySSF466891.61E-19195255IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.0E-30195256IPR009057Homeodomain-like
PROSITE profilePS5129410.504195254IPR017930Myb domain
TIGRFAMsTIGR015572.9E-24198251IPR006447Myb domain, plants
PfamPF002492.4E-7200249IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 634 aa     Download sequence    Send to blast
MAPCAAAAEF PVGLRVLVVD DDATTLKIIE QMSIRCRYRV TTCTEATVAL NLLRERKGCF  60
DVVLSDVHMP DMDGYKLLEH VGLEMDLPVI MMSGDSTTSA VMKGIRHGAC DYLIKPVREE  120
ELRNIWQHVV RKFWNDNKEL DNSGSMEDSD RNKWGNDDAE YTSSVADAAE VVKAPKKRSS  180
LKEEDIELES DDPATSKKPR VVWSVELHQQ FVSAVNQLGL DKAVPKRILE LMNVPGLTRE  240
NVASHLQKFR LYLKRLSGVA QQQNGMLNAI PGTIESKLGA TGRFDIQALA AAGHVPPETL  300
AALHAELLGH PATHMMSTVD QTTLLQASIQ GLKHSHAEHA VAYGQPLVKC HSNIGKNFSP  360
SILTVNDTSS GYGTWPSSNN TIGLVRPNSS VERVGIQNNN MLMDILEHQQ SQQHQQKQQL  420
QQQSLIHDQS CSINVQPSCM VVPSQSSDTF QAVNSPASVN QDFSFARNAI IDYSLLSQKS  480
KNSFSASQFP GGDTKARGVL YGYSTPSTCS TSSSNGNRQQ LQNSTLTFGA ARPLPSLLPM  540
SDRKDPYGFK SGDLLDQVCF RNLGFVGKGT CIPSRFVENE IESSVSDFSQ MKVNVDSSGN  600
TRNQEPNFIN IPKVSHPIIE RYPSRDHSRV FTE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A9e-22197257464ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.419880.0cotyledon
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G085900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003520002.10.0two-component response regulator ORR21 isoform X1
RefseqXP_028200114.10.0two-component response regulator ORR21 isoform X1
SwissprotQ8H7S71e-149ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLA0A0B2Q6340.0A0A0B2Q634_GLYSO; Two-component response regulator
TrEMBLK7K7570.0K7K757_SOYBN; Two-component response regulator
STRINGGLYMA02G09451.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118082433
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-113response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]