PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.02G080200.1.p | ||||||||
Common Name | GLYMA_02G080200, LOC100804843 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 496aa MW: 53705.6 Da PI: 9.1823 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.7 | 1.9e-20 | 270 | 319 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f+t+e Aa+a+++a+++++g Glyma.02G080200.1.p 270 KYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTEEAAARAYDEAALRFRG 319 8********.**********7.....337*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 9.2E-33 | 269 | 328 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.6E-38 | 270 | 333 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-22 | 270 | 328 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.2E-14 | 270 | 319 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.791 | 270 | 327 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.57E-21 | 270 | 329 | No hit | No description |
PRINTS | PR00367 | 5.6E-11 | 271 | 282 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-11 | 293 | 309 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 496 aa Download sequence Send to blast |
MLKFGTSLLY NRFILNSISK GVLRRNHTRE ILGGSWQFKF GPKIVRKKTI VYIVFMSLLT 60 VAHQRGSGEF MRFTESHGGG GGGDGDGEYG YGHDDGRGGG GGGSLGLNFN QVMQQGEVTT 120 QGGTLVSGYN RGDPDLREMV SALTHVVVSS GSGQRSTEWI QQSGFPMMSA SSLSCLSSFS 180 SPSSSGASWV GHKRGREEEE SSSSHNMIQQ QQQSAPRLFR NIGDFMVPSQ GDSSSATEEA 240 PTSTTTSVTA VATTVTETPP PPGGGERRRK YRGVRQRPWG KWAAEIRDPH KAARVWLGTF 300 DTEEAAARAY DEAALRFRGN RAKLNFPENV RAVPPIQPFQ ATTRLTVSDS TTSQFRPLVT 360 ETPPFIQQPQ IQGSSDLIRD YLQYSQLLQS DFQQQQIQQQ SPSSLLQQLY YNAQLASLQS 420 PSVLSSSPSF SSSVSPTPFP LFSTSAQFSS ASFPMFSSQQ MGYFQLPESC PPAGGVPEFP 480 PSTWSGTSGQ PPPSG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-22 | 269 | 330 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 265 | 270 | ERRRKY |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.26540 | 0.0 | hypocotyl| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.02G080200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235300 | 0.0 | AC235300.1 Glycine max strain Williams 82 clone GM_WBb0063F04, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014621193.1 | 0.0 | ethylene-responsive transcription factor ABR1 isoform X1 | ||||
Refseq | XP_028199565.1 | 0.0 | ethylene-responsive transcription factor ABR1-like | ||||
TrEMBL | A0A445LL03 | 0.0 | A0A445LL03_GLYSO; Ethylene-responsive transcription factor ERF112 | ||||
TrEMBL | K7K715 | 0.0 | K7K715_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA02G08835.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4919 | 32 | 53 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 4e-28 | ethylene response factor 110 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.02G080200.1.p |
Entrez Gene | 100804843 |