PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.02G073900.1.p | ||||||||
Common Name | GLYMA_02G073900, LOC100792644 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | GATA | ||||||||
Protein Properties | Length: 417aa MW: 45738.4 Da PI: 8.1766 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 53.8 | 2.6e-17 | 322 | 355 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +C tkTp+WR gp g+ktLCnaCG++y++ + Glyma.02G073900.1.p 322 CLHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 355 99*****************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 9.1E-17 | 316 | 366 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.543 | 316 | 352 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.43E-14 | 320 | 379 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.9E-14 | 320 | 353 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.03E-13 | 321 | 368 | No hit | No description |
Pfam | PF00320 | 5.5E-15 | 322 | 355 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 322 | 347 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence Send to blast |
MTSVNVRSLF HGGHPAPFVG PPTWALLLIT DFETIHSLIT HSSNKQNLKN KKIKIKHTLS 60 FFFPFVSHSH FSFSQENRKR KRKMIGNFID DIDCGSFFDH IDDLLEFPDD NAAPVAPPAN 120 FWSAESDSLP ASYTVFSDNS VTDLSAELSV SYDDIVQLEW LSNFVEDSFS GGSITMKKEE 180 EPQCTTTTKE DIAHAQFQTA SPVSVLESSS FCSGEKAASR GPEIYIPVPC GRVRSKRPRP 240 ATFNPHPVMQ LISPASSTGE NVQHNATTTS KAASSDSENF AESVIKGPKQ ASGEHKNKRK 300 IKVTFSSGQE QQNAPSQAVR KCLHCEITKT PQWRAGPMGP KTLCNACGVR YKSGRLFPEY 360 RPAASPTFCA AVHSNSHKKV IEMRNKTGTK SGFATDSAAS PELIPNTNNS LTLEYM* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 77 | 82 | RKRKRK |
2 | 235 | 239 | KRPRP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.26744 | 0.0 | hypocotyl |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.02G073900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003519961.2 | 0.0 | GATA transcription factor 8 isoform X1 | ||||
Refseq | XP_028199233.1 | 0.0 | GATA transcription factor 8-like isoform X1 | ||||
TrEMBL | A0A0R0KTZ8 | 0.0 | A0A0R0KTZ8_SOYBN; GATA transcription factor | ||||
TrEMBL | A0A445LKN1 | 0.0 | A0A445LKN1_GLYSO; GATA transcription factor | ||||
STRING | GLYMA02G08145.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4887 | 33 | 56 | Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54810.2 | 7e-42 | GATA family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.02G073900.1.p |
Entrez Gene | 100792644 |