PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G058900.1.p
Common NameGLYMA_02G058900, LOC100803948
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 213aa    MW: 25015.1 Da    PI: 6.1097
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G058900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.74.7e-1954107356
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          k++++t eq+  Le+ F +++++  e++ +LA +l+L+ rqV vWFqNrR ++k
  Glyma.02G058900.1.p  54 KKRKLTVEQISLLERNFSNEHKLESERKDQLALELSLDPRQVAVWFQNRRSRWK 107
                          56699************************************************9 PP
2HD-ZIP_I/II110.11.5e-3554144292
          HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                          kkr+l+ eq++lLE++F++e+kLe+erK +la eL l+prqvavWFqnrR R+kt++lE++y+ Lk+ +++ + ++++Le+ev +L+e+l
  Glyma.02G058900.1.p  54 KKRKLTVEQISLLERNFSNEHKLESERKDQLALELSLDPRQVAVWFQNRRSRWKTQKLEEEYSNLKNVHETTMLDKCHLENEVLKLKEQL 143
                          9**************************************************************************************998 PP

          HD-ZIP_I/II  92 k 92 
                           
  Glyma.02G058900.1.p 144 L 144
                          5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.5E-1552113IPR001356Homeobox domain
PfamPF000463.3E-1654107IPR001356Homeobox domain
PROSITE profilePS5007116.32554109IPR001356Homeobox domain
SuperFamilySSF466896.84E-1754117IPR009057Homeodomain-like
CDDcd000867.92E-1454110No hitNo description
Gene3DG3DSA:1.10.10.603.6E-1956116IPR009057Homeodomain-like
PROSITE patternPS00027084107IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MNHQLIEDHM MLFPWLCPGG AFTEVTPQQG ENNKPRHKRN RKNRGGENGT IITKKRKLTV  60
EQISLLERNF SNEHKLESER KDQLALELSL DPRQVAVWFQ NRRSRWKTQK LEEEYSNLKN  120
VHETTMLDKC HLENEVLKLK EQLLETKKEI EQLLERGEKA PSNNSSSSQS MEEAVNPPFL  180
GEFRVEEYDD GDVFYIPETH HINGMEWINL YN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13743KRNRKNR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, flowers and siliques. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G058900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003519905.11e-157homeobox-leucine zipper protein ATHB-40
RefseqXP_028197554.11e-157homeobox-leucine zipper protein ATHB-40-like
SwissprotO232086e-59ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLA0A445LK311e-155A0A445LK31_GLYSO; Homeobox-leucine zipper protein ATHB-40
TrEMBLK7K6N91e-155K7K6N9_SOYBN; Uncharacterized protein
STRINGGLYMA02G06560.21e-156(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47893257
Representative plantOGRP37761025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.19e-42homeobox protein 40
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]