PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G058800.1.p
Common NameGLYMA_02G058800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 339aa    MW: 35638.1 Da    PI: 5.5028
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G058800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_178.39.7e-25256318163
                          XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          e+elkr++rkq+NRe+ArrsR+RK+ae+eeL+++v++L +eN++L++el++l++e++kl+se+
  Glyma.02G058800.1.p 256 ERELKRQKRKQSNRESARRSRLRKQAECEELQKRVESLGGENQTLRDELQRLSEECEKLTSEN 318
                          89***********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077772.0E-31194IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.1E-7116228No hitNo description
Gene3DG3DSA:1.20.5.1701.2E-19251315No hitNo description
PfamPF001704.0E-22256318IPR004827Basic-leucine zipper domain
SMARTSM003382.4E-23256320IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.438258321IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.75E-12259315No hitNo description
CDDcd147023.63E-24261311No hitNo description
PROSITE patternPS000360263278IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010629Biological Processnegative regulation of gene expression
GO:0090342Biological Processregulation of cell aging
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MGAGEESTAK SSKVSSAAQQ ETPTALAYPD WSSSMQAYYA PGGTPPPFFA STVASPTPHP  60
YLWGSQHPLM PPYGTPVPYP AIYPPGSIYA HPSMAVNPSI VQQSTEIEGK GADGKDRDLS  120
KKLKGTSANT GSKAGESGKA GSGSGNDGIS QSGESGSEGS SNASDENTNQ QESAAKKKGS  180
FDLMLVDGAN AQNNSAGAIS QSSVPGKPVV PMPATNLNIG MDLWNASSGG AEAAKMRHNQ  240
SGAPGVALGD QWVQDERELK RQKRKQSNRE SARRSRLRKQ AECEELQKRV ESLGGENQTL  300
RDELQRLSEE CEKLTSENNS IKEELERLCG PEAVANLG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1272278RRSRLRK
2272279RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.352910.0cotyledon| flower| hypocotyl| leaf| meristem| root| seed coat| somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Found in both light and dark grown leaves.
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00039PBMTransfer from AT4G36730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G058800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0941890.0BT094189.1 Soybean clone JCVI-FLGm-24N9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006574484.10.0bZIP transcription factor bZIP115 isoform X1
RefseqXP_006574485.10.0bZIP transcription factor bZIP115 isoform X1
RefseqXP_025980160.10.0bZIP transcription factor bZIP115 isoform X1
RefseqXP_028197518.10.0G-box-binding factor 1-like isoform X1
RefseqXP_028197525.10.0G-box-binding factor 1-like isoform X1
SwissprotP427741e-113GBF1_ARATH; G-box-binding factor 1
TrEMBLA0A445LKG80.0A0A445LKG8_GLYSO; G-box-binding factor 1 isoform A
TrEMBLK7K6N50.0K7K6N5_SOYBN; Uncharacterized protein
STRINGGLYMA02G06550.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59333450
Representative plantOGRP7001767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.11e-100G-box binding factor 1
Publications ? help Back to Top
  1. Liao Y, et al.
    Soybean GmbZIP44, GmbZIP62 and GmbZIP78 genes function as negative regulator of ABA signaling and confer salt and freezing tolerance in transgenic Arabidopsis.
    Planta, 2008. 228(2): p. 225-40
    [PMID:18365246]
  2. Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S
    Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development.
    Mol Plant, 2013. 6(6): p. 1758-68
    [PMID:24157607]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Karumuri S,Bandopadhyay R
    In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana.
    Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9
    [PMID:25630103]
  5. Smykowski A,Zimmermann P,Zentgraf U
    CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 1164-7
    [PMID:26826725]
  6. Smykowski A,Fischer SM,Zentgraf U
    Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1.
    Plants (Basel), 2015. 4(3): p. 691-709
    [PMID:27135347]
  7. Giri MK, et al.
    GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana.
    Plant J., 2017. 91(5): p. 802-815
    [PMID:28622438]