PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G058700.1.p
Common NameGLYMA_02G058700, LOC100802883
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 524aa    MW: 58197 Da    PI: 6.3063
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G058700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2821.8e-861565223374
                 GRAS   3 elLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          e  +++A++ +s++++laqa+L+rl+++  +sp g+p++R+a++f+ AL++ l++s  +   +     +s  + +++++ +k+fs +sPi
  Glyma.02G058700.1.p 156 EEFIRAADCYDSSHFQLAQAILERLNNRllRSPMGKPLHRAAFHFKDALQSILSGSNRNGNGS--NLLSSMAEIVQTIKTYKAFSGISPI 243
                          67799*********************9889************************954444433..333333459**************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                          + fs +t+Nqa+le ++g++ vH+iDf+i+ G+Q+++L++++a+++  + +p lRiT+v+++e   + e + ++++L++fA+ lg++ + 
  Glyma.02G058700.1.p 244 PMFSIFTTNQALLETLNGSSFVHVIDFEIGLGIQYASLMKEIAEKAgpGTAPLLRITAVVPEE--YAVESRLVRQNLNQFAQDLGISAQV 331
                          *********************************************966779**********66..99999******************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyys 265
                          +++  +++e++++++ r+  gE++aV l+  +++ l  ++ +     ++L  v+++ P vvv+v+ e  ++   ++sF ++++++le+ys
  Glyma.02G058700.1.p 332 DFVPLRTFETVSFKAVRFIDGEKIAVLLSPTIFSRLGGNGGSVG---AFLADVRRMAPGVVVFVDGEgwTEAaAAASFRRGVVSSLEFYS 418
                          **9999***************************99955555555...9*******************543444677************** PP

                 GRAS 266 alfdsleaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrvee 353
                          ++++sl+a++++    e+ + +E  ll+++i  +v   ga+     ++   Wre++  aG++pv+ls++a  qa++ll+kv+ +g++v++
  Glyma.02G058700.1.p 419 MMLESLDASVASGGggEWVRRIEMLLLRPKIFAAVE--GAR-----RRTPPWREAFYGAGMRPVQLSQFADYQAECLLAKVQIRGFHVDK 501
                          *********9998888999************99885..555.....3479**************************************** PP

                 GRAS 354 esgslvlgWkdrpLvsvSaWr 374
                          ++++lvl+W++r++vs+SaWr
  Glyma.02G058700.1.p 502 RHAELVLCWHERAMVSTSAWR 522
                          ********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.34128502IPR005202Transcription factor GRAS
PfamPF035146.2E-84156522IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MRVPSSPQAS NNHVLHTNNN PNTFTYEPTS VLDLCRSPSP EKKLTVPKPE PQHNNQLDLD  60
DHVLPNSDWW ESIMKDLTLP EDSPTPLLKT NPSCIPDFPP SSQDPSFDHP TPDFTSLSEI  120
YNQNIPFNYP SNTLEPSFHD LNHSLHPHNN NWDFIEEFIR AADCYDSSHF QLAQAILERL  180
NNRLLRSPMG KPLHRAAFHF KDALQSILSG SNRNGNGSNL LSSMAEIVQT IKTYKAFSGI  240
SPIPMFSIFT TNQALLETLN GSSFVHVIDF EIGLGIQYAS LMKEIAEKAG PGTAPLLRIT  300
AVVPEEYAVE SRLVRQNLNQ FAQDLGISAQ VDFVPLRTFE TVSFKAVRFI DGEKIAVLLS  360
PTIFSRLGGN GGSVGAFLAD VRRMAPGVVV FVDGEGWTEA AAAASFRRGV VSSLEFYSMM  420
LESLDASVAS GGGGEWVRRI EMLLLRPKIF AAVEGARRRT PPWREAFYGA GMRPVQLSQF  480
ADYQAECLLA KVQIRGFHVD KRHAELVLCW HERAMVSTSA WRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-2217152125378Protein SCARECROW
5b3h_A3e-2217152124377Protein SCARECROW
5b3h_D3e-2217152124377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.588030.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G058700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8235520.0AB823552.1 Glycine max gene for gras family protein, complete cds, cultivar: Hayahikari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003519903.10.0scarecrow-like protein 15
RefseqXP_028197504.10.0scarecrow-like protein 15
SwissprotO232101e-155SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A445LK040.0A0A445LK04_GLYSO; Scarecrow-like protein 15
TrEMBLI1JCS20.0I1JCS2_SOYBN; Uncharacterized protein
STRINGGLYMA02G06530.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59593252
Representative plantOGRP10323610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-146GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]