PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G056100.1.p
Common NameGLYMA_02G056100, LOC100810719
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ZF-HD
Protein Properties Length: 335aa    MW: 37381 Da    PI: 8.6286
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G056100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer105.33.6e-33114168459
          ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                          +rY+eClkNhAas+Ggh++DGCgEfmp+ geegt+++lkCaAC+CHRnFHR+e+++
  Glyma.02G056100.1.p 114 FRYRECLKNHAASMGGHVTDGCGEFMPN-GEEGTPESLKCAACECHRNFHRKEPHQ 168
                          79*************************8.999********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.2E-30114166IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-20114175IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.8E-31115165IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.979116165IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.604.2E-29263332IPR009057Homeodomain-like
SuperFamilySSF466891.0E-18263331IPR009057Homeodomain-like
TIGRFAMsTIGR015652.2E-26270327IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MDMREQDKVI EMPSTLGYNN SSSGSKLSSP IGERSSDQLP PHQSHTLVFT DPPQTSSHHH  60
NLYPPSLPPN PLQLPQPHHR PRRDPDPSSI ISPPIISTTP TTAPPQPHTT TTLFRYRECL  120
KNHAASMGGH VTDGCGEFMP NGEEGTPESL KCAACECHRN FHRKEPHQGV LVESQLQHVL  180
LNKNNRNINT IIHSPDSHHH LQFPTPHSHL HGGPPVVQPV MLGFGGSGPA ESSSEDLNMF  240
QTNDHGGGGN NLLLSSVQQQ PPLLSSSSSK KRFRTKFTQQ QKDRMMEFAE KLGWKIQKQD  300
EQELHQFCSQ VGVRRQVFKV WMHNSKQALK KKQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-222693281675ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.386270.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G056100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150342e-90AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003520309.10.0zinc-finger homeodomain protein 6
TrEMBLI1JCP50.0I1JCP5_SOYBN; Uncharacterized protein
STRINGGLYMA02G06270.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.13e-60homeobox protein 24