PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G051900.3.p
Common NameGLYMA_02G051900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family SRS
Protein Properties Length: 327aa    MW: 35290.5 Da    PI: 7.3971
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G051900.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702211.71.9e-651152573154
               DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstkls 92 
                          +g++sCqdCGnqakkdC h+RCRtCCksrg+dC+thvkstWvpa+krrerqq+laa+++++    +e++++++r+ +++ +  +s+t+l+
  Glyma.02G051900.3.p 115 EGGISCQDCGNQAKKDCPHMRCRTCCKSRGYDCQTHVKSTWVPASKRRERQQALAALQQQQ----QEQQQQQQRDISKRPRDPTSCTRLP 200
                          6889***************************************************997766....4556666777777788889999999 PP

               DUF702  93 saeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                          s+e+       ++P+ vss+a frcvrvs v+d+++ +aYqtavsigGhvfkGiLyd+G+e+
  Glyma.02G051900.3.p 201 SSEE-----EGNFPSVVSSPAEFRCVRVSCVEDADDRYAYQTAVSIGGHVFKGILYDYGPEN 257
                          8864.....478************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.9E-65117256IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.7E-27119161IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.1E-24208255IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MAGLFSLGGG GGGGRGNNNN NQSSEIPPAE TLFWYSSKND DVSSFHRGFE LWNQQDQHHH  60
HHHHVMHPHA RPLLQRDLYS SGVGPSRGGG GVSDDDHSSS RSAALVAMRA AAAAEGGISC  120
QDCGNQAKKD CPHMRCRTCC KSRGYDCQTH VKSTWVPASK RRERQQALAA LQQQQQEQQQ  180
QQQRDISKRP RDPTSCTRLP SSEEEGNFPS VVSSPAEFRC VRVSCVEDAD DRYAYQTAVS  240
IGGHVFKGIL YDYGPENNNH NNSNNNSNNN YTAGETSASV VAAAQPLNLA AISSAALVDT  300
SSLYSAPVNA FMAGGSGTQF FPHTRS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G051900.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006574690.11e-161protein SHI RELATED SEQUENCE 1
RefseqXP_006574691.11e-161protein SHI RELATED SEQUENCE 1
TrEMBLA0A0R0KRT10.0A0A0R0KRT1_SOYBN; Uncharacterized protein
STRINGGLYMA02G05830.11e-160(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.13e-56Lateral root primordium (LRP) protein-related