PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G051900.1.p
Common NameGLYMA_02G051900, LOC100789129
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family SRS
Protein Properties Length: 329aa    MW: 35460.7 Da    PI: 7.3971
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G051900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702213.16.5e-661152593154
               DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstkls 92 
                          +g++sCqdCGnqakkdC h+RCRtCCksrg+dC+thvkstWvpa+krrerqq+laa+++++    +e++++++r+ +++ +  +s+t+l+
  Glyma.02G051900.1.p 115 EGGISCQDCGNQAKKDCPHMRCRTCCKSRGYDCQTHVKSTWVPASKRRERQQALAALQQQQ----QEQQQQQQRDISKRPRDPTSCTRLP 200
                          6889***************************************************997776....4456666777777788889999999 PP

               DUF702  93 saeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                          s+      e  ++P+ vss+a frcvrvs v+d+++ +aYqtavsigGhvfkGiLyd+G+e+
  Glyma.02G051900.1.p 201 SSGL---EEEGNFPSVVSSPAEFRCVRVSCVEDADDRYAYQTAVSIGGHVFKGILYDYGPEN 259
                          8754...46778************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.1E-65117258IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016231.7E-27119161IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016241.1E-24210257IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MAGLFSLGGG GGGGRGNNNN NQSSEIPPAE TLFWYSSKND DVSSFHRGFE LWNQQDQHHH  60
HHHHVMHPHA RPLLQRDLYS SGVGPSRGGG GVSDDDHSSS RSAALVAMRA AAAAEGGISC  120
QDCGNQAKKD CPHMRCRTCC KSRGYDCQTH VKSTWVPASK RRERQQALAA LQQQQQEQQQ  180
QQQRDISKRP RDPTSCTRLP SSGLEEEGNF PSVVSSPAEF RCVRVSCVED ADDRYAYQTA  240
VSIGGHVFKG ILYDYGPENN NHNNSNNNSN NNYTAGETSA SVVAAAQPLN LAAISSAALV  300
DTSSLYSAPV NAFMAGGSGT QFFPHTRS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G051900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006574690.10.0protein SHI RELATED SEQUENCE 1
RefseqXP_006574691.10.0protein SHI RELATED SEQUENCE 1
TrEMBLI1JCK90.0I1JCK9_SOYBN; Uncharacterized protein
STRINGGLYMA02G05830.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF88234125
Representative plantOGRP18721140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51060.14e-57Lateral root primordium (LRP) protein-related