PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G050100.1.p
Common NameGLYMA_02G050100, LOC100797578
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 363aa    MW: 42022.3 Da    PI: 6.5158
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G050100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM178.12.4e-5561351129
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                          +ppGfrFhPtdeelv +yL+kkv+++k++l +vike+d+y++ePwdL++     ++e++ewyfFs++dkky+tg+r+nrat +g+Wkatg
  Glyma.02G050100.1.p   6 VPPGFRFHPTDEELVGYYLRKKVASQKIDL-DVIKEIDLYRIEPWDLQEicrIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATG 94 
                          69****************************.9***************954532334667******************************* PP

                  NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                          +dk+v++ + +l+g++ktLvfykgrap+g+ktdW+mheyrle
  Glyma.02G050100.1.p  95 RDKSVYE-SIKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLE 135
                          *******.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-583155IPR003441NAC domain
PROSITE profilePS5100558.7926155IPR003441NAC domain
PfamPF023651.1E-287134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MMESCVPPGF RFHPTDEELV GYYLRKKVAS QKIDLDVIKE IDLYRIEPWD LQEICRIGYE  60
EQNEWYFFSH KDKKYPTGTR TNRATMAGFW KATGRDKSVY ESIKLIGMRK TLVFYKGRAP  120
NGQKTDWIMH EYRLETVENG PPQEEGWVVC RAFKKRTTNG QTKTIERWDR NYLYDEQACG  180
SVSSTVVDHN IDLMVRQQQP QRFSAAQNFL YKQEEIIEEG NNNLSFMHAE QHLVQLPQLE  240
SPSLPLAKKQ SSVMSLISEN IINNEDIDNI SQKGLSHNTA KKVTTDWRAL DKFVASQLSQ  300
EERHEFIGVS SFATHHTTTS SDMALLLLQN NSRENERNYK FNPFLNTSST SDCDIGICVF  360
EK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-50315612169Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.575241e-161hypocotyl
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Up-regulated during xylem vessel element formation. Expressed preferentially in procambial cells adjacent to root meristem. {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
UniprotTISSUE SPECIFICITY: Expressed in root metaxylem pole and in shoot pre-procambium and procambium (PubMed:18445131). Present in root developing xylems (PubMed:16103214). Specifically expressed in vessels but not in interfascicular fibers in stems (PubMed:25148240). {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:18445131, ECO:0000269|PubMed:25148240}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G050100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0941621e-153BT094162.1 Soybean clone JCVI-FLGm-18C16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003520268.10.0NAC domain-containing protein 37
SwissprotQ9SL411e-141NAC37_ARATH; NAC domain-containing protein 37
TrEMBLI1JCJ20.0I1JCJ2_SOYBN; Uncharacterized protein
STRINGGLYMA02G05620.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45653459
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.11e-125vascular related NAC-domain protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Negi S,Tak H,Ganapathi TR
    Cloning and functional characterization of MusaVND1 using transgenic banana plants.
    Transgenic Res., 2015. 24(3): p. 571-85
    [PMID:25523085]
  3. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]