PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.02G040100.1.p

Common Name

GLYMA_02G040100, LOC100808910

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

ZF-HD

Protein Properties

Length: 296aa MW: 32641.5 Da PI: 7.8751

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.02G040100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	98.7	4.4e-31	95	150	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++rY+eClkNhA+ +Ggha+DGCgEfm++ g egt +alkCaAC CHRnFHR+e ++ Glyma.02G040100.1.p 95 RARYRECLKNHAVGIGGHALDGCGEFMAA-GMEGTLDALKCAACSCHRNFHRKEADS 150 689***********************9.999******************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	6.0E-23	86	150	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	3.6E-28	96	148	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.8E-28	97	147	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.979	98	147	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	1.9E-31	221	294	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.63E-18	223	293	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	8.9E-26	232	288	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MNEYTFGQRK HEGTERETLR EREYETPTTR ISQNLLNSIE KLTKLKEFRE MEFEDQEEQE 60 EELCMGGGGA GYDPTRMKVP VAAEPVRSTN GGGGRARYRE CLKNHAVGIG GHALDGCGEF 120 MAAGMEGTLD ALKCAACSCH RNFHRKEADS SAVVAFSGGD PYLIPHHHPP PQFAAYYRHP 180 AGYLHVAGQQ HRSAVGGTLA LPSTSGGGGT QSTREDQEDI SNNPSAGGTG SKKRFRTKFT 240 VEQKEKMLEL AEKLGWRIQK QDEAVVQAFC NETGVKRHVL KVWMHNNKHT LGKKP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh5_A	6e-25	232	290	17	75	ZF-HD homeobox family protein
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.23723	0.0	cotyledon

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.02G040100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	1e-113	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003519839.2	0.0	zinc-finger homeodomain protein 1
Refseq	XP_028195755.1	0.0	zinc-finger homeodomain protein 1-like
Swissprot	A2Z259	1e-75	ZHD1_ORYSI; Zinc-finger homeodomain protein 1
Swissprot	Q6YXH5	1e-75	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	A0A445LJK6	0.0	A0A445LJK6_GLYSO; Zinc-finger homeodomain protein 1
TrEMBL	K7K6C7	0.0	K7K6C7_SOYBN; Uncharacterized protein
STRING	GLYMA02G04550.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF206	34	253
Representative plant	OGRP91	16	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	6e-69	homeobox protein 22

Link Out ? help Back to Top
Phytozome	Glyma.02G040100.1.p
Entrez Gene	100808910

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]