PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G039300.1.p
Common NameGLYMA_02G039300, LOC100805376
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 392aa    MW: 43268.9 Da    PI: 6.8446
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G039300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.41.5e-1755104255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +gr++AeIrdp     +  r +lg+f+taeeAa a++ a+++++g
  Glyma.02G039300.1.p  55 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDCAARAMRG 104
                          59*******.**********93....35999**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.11555112IPR001471AP2/ERF domain
PfamPF008474.4E-1155104IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-2955111IPR001471AP2/ERF domain
CDDcd000185.93E-3055111No hitNo description
SuperFamilySSF541713.33E-2155112IPR016177DNA-binding domain
SMARTSM003801.7E-3355118IPR001471AP2/ERF domain
PRINTSPR003672.2E-95667IPR001471AP2/ERF domain
PRINTSPR003672.2E-97894IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MEEAMRRLNG VAPIIGPDSK GDGGLIANNP KRTSAVNKRA LREDGGGGGG GGAMRYRGVR  60
RRPWGRYAAE IRDPQSKERR WLGTFDTAEE AACAYDCAAR AMRGLKARTN FVYPTSPQPS  120
SATTEHLFPN FNNNNNFHKH SLFNHHRNRH ITGSNTCFDH PHSVDFSAPR NPSSLNMLLF  180
RDLIHSNPSL LSSSSTQNFH DQFYNKSTST FSSLPVSPSL APPSYSMNNS CGGSLSVKMN  240
TFPTCGTNFA EKGDDGDGFF SRESSDSGLL EEIVNKFLPR TKPSKCETTF ANPQEESLLL  300
PPLVSESTLV STGQQYYDDD MKKGFPKNEG LGVFYSDQGF PMQQFDTSNG FNSMAMENDQ  360
NIINNAENCV VEDVFQYQEL LNAFAIRMQN A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1943111271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G039300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN5902430.0JN590243.1 Glycine max ethylene-responsive transcription factor ESR1 (ESR1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003519832.10.0ethylene-responsive transcription factor ESR2
TrEMBLK7K6B80.0K7K6B8_SOYBN; Uncharacterized protein
STRINGGLYMA02G04460.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41003256
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.18e-14DORNROSCHEN-like