PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.02G026300.2.p | ||||||||
Common Name | GLYMA_02G026300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 223aa MW: 24008.4 Da PI: 10.5726 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.9 | 2.7e-14 | 16 | 60 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky Glyma.02G026300.2.p 16 PWTEEEHRLFLLGLHKVGKGDWRGISRNFVKTRTPTQVASHAQKY 60 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.092 | 12 | 65 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-10 | 13 | 63 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 3.3E-16 | 14 | 63 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 4.88E-16 | 15 | 64 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.8E-11 | 15 | 60 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.4E-11 | 16 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.16E-10 | 16 | 61 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MINCDGVFGL LIEGVPWTEE EHRLFLLGLH KVGKGDWRGI SRNFVKTRTP TQVASHAQKY 60 FLRRHNQNRR RRRSSLFDIT TDTVMESSTI MEEEQVPQET MAAPIPAAYP PFPGAGFPMS 120 LSPVVLPVSG ERLTKPIRPT PIVPVPPSSK MANLNLKGKA SRTNLIEPLP LSLNLPSPTP 180 RSQDQSPANS GHSSPSSSSA AAFQAMSAAK FGGGGDSIIS VA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.12659 | 0.0 | leaf| pod| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.02G026300.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031178 | 0.0 | KT031178.1 Glycine max clone HN_CCL_87 MYB/HD-like transcription factor (Glyma02g03020.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001237761.2 | 1e-151 | MYB transcription factor MYB138 | ||||
Refseq | XP_028194029.1 | 1e-151 | transcription factor MYB1R1-like | ||||
TrEMBL | A0A445LIT4 | 1e-161 | A0A445LIT4_GLYSO; Transcription factor KUA1 isoform B | ||||
TrEMBL | I1JBU9 | 1e-161 | I1JBU9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA02G03020.1 | 1e-150 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G70000.2 | 2e-36 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.02G026300.2.p |