PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G026300.1.p
Common NameGLYMA_02G026300, Glyma02g03020.1
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 301aa    MW: 32166.2 Da    PI: 10.4102
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G026300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.24.4e-1494138347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+eE+ l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky
  Glyma.02G026300.1.p  94 PWTEEEHRLFLLGLHKVGKGDWRGISRNFVKTRTPTQVASHAQKY 138
                          8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.55487143IPR017930Myb domain
SuperFamilySSF466897.9E-1789142IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-1690141IPR006447Myb domain, plants
SMARTSM007171.2E-1091141IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.5E-1193138IPR009057Homeodomain-like
PfamPF002492.2E-1194138IPR001005SANT/Myb domain
CDDcd001679.52E-1094139No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MSRTCSLCGN NGHNSRTCTD GGAAASCGGS PRENGIMLFG VRVMTEANSS FRKSASMNNL  60
SQYDAESNAA DAGYASDDVV HASGRTRERK RGVPWTEEEH RLFLLGLHKV GKGDWRGISR  120
NFVKTRTPTQ VASHAQKYFL RRHNQNRRRR RSSLFDITTD TVMESSTIME EEQVPQETMA  180
APIPAAYPPF PGAGFPMSLS PVVLPVSGER LTKPIRPTPI VPVPPSSKMA NLNLKGKASR  240
TNLIEPLPLS LNLPSPTPRS QDQSPANSGH SSPSSSSAAA FQAMSAAKFG GGGDSIISVA  300
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.126590.0leaf| pod| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Accumulates during leaf expansion. First observed at the tip of the leaves 12 days after sowing (DAS). At 14 DAS, expressed throughout the leaf blade to fade out thereafter in a basipetal manner. In mature leaves, detected in vascular tissue, especially in companion cells (PubMed:24806884). Accumulates to higher levels in old rosette leaves than in young rosette and cauline leaves (PubMed:25920996). {ECO:0000269|PubMed:24806884, ECO:0000269|PubMed:25920996}.
UniprotTISSUE SPECIFICITY: Expressed ubiquitously, except in hypocotyls, root tips and lateral root primordia. {ECO:0000269|PubMed:25920996}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor (PubMed:23888064, PubMed:24806884). Direct regulator of the transcription of peroxidase (Prxs) and reactive oxygen species (ROS)-related genes via the recognition of 5'-ATCACA-3' motif (PubMed:24806884). Binds to 5'-TATCCA-3' motif (TA box) and represses the activity of corresponding promoters (e.g. sugar response genes) (PubMed:25920996). Regulates hypocotyl elongation in response to darkness by enhancing auxin accumulation in a phytochrome-interacting factor (PIF) proteins-dependent manner. Promotes lateral roots formation (PubMed:23888064). Promotes cell expansion during leaves development via the modulation of cell wall-located Prxs (PubMed:24806884). Plays a critical role in developmentally regulated and dark-induced onset of leaf senescence by repressing the transcription of several genes involved in chloroplast function and responses to light and auxin. Promotes responses to auxin, abscisic acid (ABA), and ethylene (PubMed:25920996). {ECO:0000269|PubMed:23888064, ECO:0000269|PubMed:24806884, ECO:0000269|PubMed:25920996}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G026300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by CdCl(2) (PubMed:16463103). Accumulates in the dark (PubMed:23888064, PubMed:25920996). Diurnal expression pattern with maximal levels in the morning (at protein level). Specifically induced during leaf expansion (PubMed:24806884). Expressed in old and dark-treated leaves (PubMed:25920996). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:23888064, ECO:0000269|PubMed:24806884, ECO:0000269|PubMed:25920996}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311780.0KT031178.1 Glycine max clone HN_CCL_87 MYB/HD-like transcription factor (Glyma02g03020.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001237761.20.0MYB transcription factor MYB138
RefseqXP_028194029.10.0transcription factor MYB1R1-like
SwissprotQ9LVS02e-58KUA1_ARATH; Transcription factor KUA1
TrEMBLA0A0K2CTB50.0A0A0K2CTB5_SOYBN; MYB/HD-like transcription factor (Fragment)
TrEMBLA0A445LIM30.0A0A445LIM3_GLYSO; Transcription factor KUA1 isoform A
STRINGGLYMA02G03020.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53383350
Representative plantOGRP3941699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70000.25e-77MYB_related family protein
Publications ? help Back to Top
  1. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]
  2. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]