PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.02G022300.1.p | ||||||||
Common Name | GLYMA_02G022300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 346aa MW: 39145.3 Da PI: 4.3928 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.9 | 8.7e-19 | 86 | 139 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t+eq++ Le+ Fe ++++ e++ +LAk+lgL+ rqV +WFqNrRa+ k Glyma.02G022300.1.p 86 KKRRLTSEQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFK 139 56689***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 131.3 | 3.7e-42 | 86 | 177 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 kkrrl++eqv++LE++Fe e+kLeperKv+la+eLglqprqva+WFqnrRAR+ktkqlEkdy +Lk++yd+lk++ e+L +e+++L++e+ Glyma.02G022300.1.p 86 KKRRLTSEQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKDYGVLKASYDRLKSDYESLVQENDKLKAEV 175 9**************************************************************************************999 PP HD-ZIP_I/II 92 ke 93 ++ Glyma.02G022300.1.p 176 NS 177 75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.05E-19 | 77 | 143 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.378 | 81 | 141 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.5E-17 | 83 | 145 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.89E-17 | 84 | 142 | No hit | No description |
Pfam | PF00046 | 2.7E-16 | 86 | 139 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.5E-20 | 88 | 148 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 5.5E-6 | 112 | 121 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 116 | 139 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 5.5E-6 | 121 | 137 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 9.6E-19 | 141 | 182 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MASGKLYAGS NMSLLLQNER LPCSSEVLES LWAQTSNPAS FQGSKPVVDF ENVSGSRMTD 60 RPFFQALEKE ENCDEDYEGC FHQPGKKRRL TSEQVQFLER NFEVENKLEP ERKVQLAKEL 120 GLQPRQVAIW FQNRRARFKT KQLEKDYGVL KASYDRLKSD YESLVQENDK LKAEVNSLES 180 KLILRDKEKE ENSDDKSSPD DAVNSSSPHN NKEPMDLLII SKNATTTTTS ENGTKVLSPL 240 PLPIMVTCCK QEDANSAKSD VLDSDSPHCT SFVEPADSSH AFEPEDHSED FSQDEEDNLS 300 ENLLMTFPSS CCLPKVEEHC YDGPPENSCN FGFQVEDQTF CFWPY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 133 | 141 | RRARFKTKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.22870 | 0.0 | cotyledon| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.02G022300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT094197 | 0.0 | BT094197.1 Soybean clone JCVI-FLGm-24N17 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006574472.1 | 0.0 | homeodomain-leucine zipper protein 57 isoform X1 | ||||
Refseq | XP_028193699.1 | 0.0 | homeobox-leucine zipper protein HAT5-like | ||||
TrEMBL | A0A0B2R516 | 0.0 | A0A0B2R516_GLYSO; Homeobox-leucine zipper protein HAT5 | ||||
TrEMBL | I1JBR7 | 0.0 | I1JBR7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA02G02630.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1500 | 34 | 99 | Representative plant | OGRP129 | 16 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 4e-46 | homeobox 1 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.02G022300.1.p |
Entrez Gene | 547565 |
Publications ? help Back to Top | |||
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