PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G020300.1.p
Common NameGLYMA_02G020300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 528aa    MW: 58336.8 Da    PI: 6.1351
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G020300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.61.6e-30210269159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          ++Dg++WrKYGqK+ kg+++pr+YYrCt + +Cpv+k+v+r+aed +++++tYeg+Hnh+
  Glyma.02G020300.1.p 210 MNDGCHWRKYGQKMAKGNPCPRAYYRCTASpSCPVRKQVQRCAEDMSILITTYEGTHNHP 269
                          58**************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.9E-32196271IPR003657WRKY domain
SuperFamilySSF1182903.14E-27203271IPR003657WRKY domain
PROSITE profilePS5081128.621205271IPR003657WRKY domain
SMARTSM007741.9E-36210270IPR003657WRKY domain
PfamPF031061.3E-26211269IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
ETKLCSSPPR YHIYTVLVME DNNFLDSNGD EEINVKNQDL ESAKGETMGE AREENKMLEF  60
FEILQQDKPE DATNAKGVFS HDEENEESEL VSLSLGISIS KGKPTKDEKI LKNKNGIEKT  120
EDEDVHNKRL VLGLDINLDP VDQDELTANN STTESSFVGE RGKEEEPTEM WPPSKVLKTM  180
KSVDKSEVSQ HDQPKKTRVS IRARCDTQTM NDGCHWRKYG QKMAKGNPCP RAYYRCTASP  240
SCPVRKQVQR CAEDMSILIT TYEGTHNHPL PMSATAMACT TSAAASMLQS PSLSSQHGLV  300
DSAISSIINS SAPYYNPNNA LNFSTHQVSR PQQFYFPNSS ISTLNSHPTI TLDLTTPPTS  360
SSNSSFTCMP KYSSTNLNFS SGFSPLHSSM PQSPWNSYSG YFNSGTLSQN RHHGGNYMLN  420
TGNQNQPHSL GHLHQPIYMS NNSTISQHSF PNPIVAATEA IITSNPKFQS ALATALTAYV  480
GNEASGGRLR ENHVLENAEL MNLKLLRSEN SIGNSSIFPL PLPEQWK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-21197271174WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G020300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-95AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014619828.10.0probable WRKY transcription factor 61
RefseqXP_028193397.10.0probable WRKY transcription factor 61
TrEMBLK7K5Z50.0K7K5Z5_SOYBN; Uncharacterized protein
STRINGGLYMA02G02430.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.11e-50WRKY DNA-binding protein 72