PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.02G019100.2.p | ||||||||
Common Name | GLYMA_02G019100, LOC100808033 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 288aa MW: 32650.4 Da PI: 6.587 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57 | 3.4e-18 | 80 | 133 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k Glyma.02G019100.2.p 80 KKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 133 456899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 132.4 | 1.7e-42 | 79 | 169 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 ekkrrl+ eqvk+LE+sFe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy++Lkr+y+a+k++n++L++++++L++e Glyma.02G019100.2.p 79 EKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKRQYEAVKSDNDALQAQNQKLQAE 168 69**************************************************************************************98 PP HD-ZIP_I/II 91 l 91 + Glyma.02G019100.2.p 169 I 169 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.41E-19 | 71 | 137 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.394 | 75 | 135 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.8E-18 | 78 | 139 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.6E-15 | 80 | 133 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.10E-16 | 80 | 136 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-19 | 82 | 142 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.1E-5 | 106 | 115 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 110 | 133 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.1E-5 | 115 | 131 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.0E-16 | 135 | 175 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MAFFPANFML QTPHHDDHHH HQPPPSLTSI LPTCAPQEYH GGVTILGKRS MSFSSGIEHG 60 EEANNAEEDL SDDGSQAGEK KRRLNMEQVK TLEKSFELGN KLEPERKMQL ARALGLQPRQ 120 IAIWFQNRRA RWKTKQLEKD YDVLKRQYEA VKSDNDALQA QNQKLQAEIL ALKSREPTES 180 INLNKETEGS CSNRSENSSD IKLDISRTPA IDSPHSTHQQ QPSRPFFPPS SVRPAGVAQL 240 FQTSSRPELA SCQKIDQMVK EESLSNMFCG MDDQSGFWPW LEQQHFN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 127 | 135 | RRARWKTKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.55995 | 0.0 | cotyledon| hypocotyl| leaf| pod| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in leaves and flowers. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.02G019100.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT098824 | 0.0 | BT098824.1 Soybean clone JCVI-FLGm-13G9 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006574451.1 | 0.0 | uncharacterized protein LOC100808033 isoform X2 | ||||
Refseq | XP_006574452.1 | 0.0 | uncharacterized protein LOC100808033 isoform X2 | ||||
Refseq | XP_028193312.1 | 0.0 | homeobox-leucine zipper protein ATHB-13-like isoform X2 | ||||
Refseq | XP_028193315.1 | 0.0 | homeobox-leucine zipper protein ATHB-13-like isoform X2 | ||||
Swissprot | Q8LC03 | 1e-121 | ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13 | ||||
TrEMBL | A0A445LIH2 | 0.0 | A0A445LIH2_GLYSO; Homeobox-leucine zipper protein ATHB-13 isoform A | ||||
TrEMBL | I1JBM8 | 0.0 | I1JBM8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA02G02290.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 1e-112 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.02G019100.2.p |
Entrez Gene | 100808033 |
Publications ? help Back to Top | |||
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