PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.02G019100.1.p | ||||||||
Common Name | GLYMA_02G019100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 296aa MW: 33680.6 Da PI: 6.6483 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.9 | 3.5e-18 | 88 | 141 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k Glyma.02G019100.1.p 88 KKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 141 456899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 132.3 | 1.8e-42 | 87 | 177 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 ekkrrl+ eqvk+LE+sFe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy++Lkr+y+a+k++n++L++++++L++e Glyma.02G019100.1.p 87 EKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKRQYEAVKSDNDALQAQNQKLQAE 176 69**************************************************************************************98 PP HD-ZIP_I/II 91 l 91 + Glyma.02G019100.1.p 177 I 177 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.5E-19 | 79 | 145 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.394 | 83 | 143 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.8E-18 | 86 | 147 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.11E-16 | 88 | 144 | No hit | No description |
Pfam | PF00046 | 1.7E-15 | 88 | 141 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-19 | 90 | 150 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.2E-5 | 114 | 123 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 118 | 141 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.2E-5 | 123 | 139 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.1E-16 | 143 | 183 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MWHKTCNEMA FFPANFMLQT PHHDDHHHHQ PPPSLTSILP TCAPQEYHGG VTILGKRSMS 60 FSSGIEHGEE ANNAEEDLSD DGSQAGEKKR RLNMEQVKTL EKSFELGNKL EPERKMQLAR 120 ALGLQPRQIA IWFQNRRARW KTKQLEKDYD VLKRQYEAVK SDNDALQAQN QKLQAEILAL 180 KSREPTESIN LNKETEGSCS NRSENSSDIK LDISRTPAID SPHSTHQQQP SRPFFPPSSV 240 RPAGVAQLFQ TSSRPELASC QKIDQMVKEE SLSNMFCGMD DQSGFWPWLE QQHFN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 135 | 143 | RRARWKTKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.55995 | 0.0 | cotyledon| hypocotyl| leaf| pod| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in leaves and flowers. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.02G019100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT098824 | 0.0 | BT098824.1 Soybean clone JCVI-FLGm-13G9 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028193307.1 | 0.0 | homeobox-leucine zipper protein ATHB-13-like isoform X1 | ||||
Swissprot | Q8LC03 | 1e-121 | ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13 | ||||
TrEMBL | A0A445LIE1 | 0.0 | A0A445LIE1_GLYSO; Homeobox-leucine zipper protein ATHB-13 isoform B | ||||
TrEMBL | I1JBM6 | 0.0 | I1JBM6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA02G02290.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1271 | 33 | 106 | Representative plant | OGRP129 | 16 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 1e-112 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.02G019100.1.p |
Publications ? help Back to Top | |||
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