PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G009800.1.p
Common NameGLYMA_02G009800, MYB76
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 261aa    MW: 30053.6 Da    PI: 6.5105
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G009800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.61.4e-181966148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd  l+++v+ +G g+W++ ar  g++Rt+k+c++rw++yl
  Glyma.02G009800.1.p 19 KGPWTEEEDSVLINYVNVHGEGHWNSLARSSGLKRTGKSCRLRWFNYL 66
                         79********************************************97 PP
2Myb_DNA-binding45.91.3e-1472115146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ T +E++l+++++  +G++ W++Ia+ ++ gRt++++k++w++
  Glyma.02G009800.1.p  72 RGNITLQEQLLILELHSHWGNR-WAKIAEQLP-GRTDNEIKNYWRT 115
                          7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.4721470IPR017930Myb domain
SuperFamilySSF466891.94E-3017113IPR009057Homeodomain-like
SMARTSM007175.2E-151868IPR001005SANT/Myb domain
PfamPF002498.4E-161966IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-222073IPR009057Homeodomain-like
CDDcd001675.00E-112166No hitNo description
PROSITE profilePS5129418.58571121IPR017930Myb domain
SMARTSM007174.7E-1371119IPR001005SANT/Myb domain
PfamPF002491.2E-1372115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-2174119IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
METMNVQVMR SLSDMVIKKG PWTEEEDSVL INYVNVHGEG HWNSLARSSG LKRTGKSCRL  60
RWFNYLRPNV RRGNITLQEQ LLILELHSHW GNRWAKIAEQ LPGRTDNEIK NYWRTRVVKQ  120
AKQLKCHVNS KQFRDALRFV WMPRLMEQIQ ASSSSYGLDQ TTLCNTQTHR DNSMVSSYSS  180
EVDLQPPSLS DTSITSSSYN LIGDGGLSTE SAEKGSIYSL WQHWDYSDIQ AFEPCNGFGD  240
ADLWTDENMW FLQQHLADEL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-25111211108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.282590.0leaf| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in leaves. Expressed in roots and shoots. Expressed at low levels in flowers. {ECO:0000269|PubMed:22301384}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G009800.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC5892990.0KC589299.1 Macrotyloma uniflorum cultivar VZM-1 transcription factor MYB76 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001235761.10.0MYB transcription factor MYB76
RefseqXP_028192544.10.0transcription factor MYB78-like
SwissprotQ10MB46e-75MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A445LHZ90.0A0A445LHZ9_GLYSO; Transcription factor MYB2
TrEMBLQ0PJK70.0Q0PJK7_SOYBN; MYB transcription factor MYB76
STRINGGLYMA02G01300.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47190.14e-67myb domain protein 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]