PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.02G007500.1.p
Common NameGLYMA_02G007500, LOC100785933
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 485aa    MW: 52856.7 Da    PI: 8.4161
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.02G007500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.43.9e-30251309259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dg++WrKYGqK  kg+++pr+YYrCt+a gCpv+k+v+r+ ed++v+++tYeg+Hnh+
  Glyma.02G007500.1.p 251 SDGCQWRKYGQKIAKGNPCPRAYYRCTMAvGCPVRKQVQRCMEDKTVLITTYEGNHNHP 309
                          7*********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-32235311IPR003657WRKY domain
SuperFamilySSF1182902.62E-27244311IPR003657WRKY domain
PROSITE profilePS5081129.964245311IPR003657WRKY domain
SMARTSM007743.4E-35250310IPR003657WRKY domain
PfamPF031062.5E-26252309IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MENHHQILQQ PNREFTLLRS TDFLRQNLNL DPPTVNTGKH VDPSIKEVDF FSSSSSPPKN  60
SGTYNSSQEE SRDRRTNMAK DDRSPTLFND QLVNTALNLS PGAGVSRSAA NDENLKTLLN  120
TLQRESLRLQ EENCKLRTML DQITKNNYQL QLFIALQKQK QCQKVETNSM ICGQHLLDPR  180
PCTKLDAQVA SFPDDKSGQQ GDPVEDVLEQ TSSHSWGSSK SPTFEKSKPS ELPFKKTRVS  240
VRAKSEAPLI SDGCQWRKYG QKIAKGNPCP RAYYRCTMAV GCPVRKQVQR CMEDKTVLIT  300
TYEGNHNHPL PPSATVMANS TSAAAAMLLS SSCSISNTEA LSNTVGVFSS MPYIPMATLS  360
TSAPFPTITL DMTTNPMQLH RETSSALTSL LPLHATSIPQ LLGHPVIFPH KMPHPLGQQQ  420
QPLFLNETMS AAIASNPNFT IALAAAISSI IGAPRGTDGN NNNSSNGGSH VLPLNGASML  480
PGST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-22241311877Probable WRKY transcription factor 4
2lex_A8e-22241311877Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.367710.0cotyledon
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.02G007500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0195521e-108EU019552.1 Glycine max WRKY1 (WRKY1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003519729.10.0probable WRKY transcription factor 47
TrEMBLK7K5U20.0K7K5U2_SOYBN; Uncharacterized protein
STRINGGLYMA02G01031.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF104392541
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01720.11e-64WRKY family protein