PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G240100.1.p
Common NameGLYMA_01G240100, LOC100815499
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 732aa    MW: 80340 Da    PI: 6.2778
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G240100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.46.7e-2063118156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          ++  +++t+ q+ee+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  Glyma.01G240100.1.p  63 KKGYRRHTQRQIEEMEAFFKQCPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 118
                          5778899**********************************************999 PP
2START206.78.9e-652504701206
                          HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS
                START   1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla.... 77 
                          ela +a++el ++a+a+ep+Wv s    e++n+de+l++f++ +        ++ea+r+s+vv+m++ +l  +l+d++ qW++ +     
  Glyma.01G240100.1.p 250 ELAVAAMEELTRLAQAGEPLWVPSNhhsEILNEDEYLRTFPTRGLgpkplgLRSEASRESVVVIMNHINLIDILMDVN-QWSTVFCgivs 338
                          57899***********************************88766*********************************.******99999 PP

                          EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTC CS
                START  78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksng 160
                          +a tlev+s+g      galq+m++e+q+ splvp R+ +fvRy++q+++g w++vdvS+d+ ++ +    + R++++pSg+li++++ng
  Glyma.01G240100.1.p 339 RALTLEVLSTGiagnynGALQVMSSEFQVASPLVPtRENYFVRYCKQQPDGIWAVVDVSLDNLRPST----ISRSRRRPSGCLIQELPNG 424
                          *****************************************************************88....79***************** PP

                          EEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 161 hskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                          +skvtw+ehv++++r +h+++r lv+sgla+gak+wvatl+rqce+
  Glyma.01G240100.1.p 425 YSKVTWIEHVEVDDRAVHSIYRTLVNSGLAFGAKRWVATLERQCER 470
                          ********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.85E-1947120IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-2148118IPR009057Homeodomain-like
PROSITE profilePS5007116.68260120IPR001356Homeobox domain
SMARTSM003891.8E-1862124IPR001356Homeobox domain
PfamPF000462.0E-1763118IPR001356Homeobox domain
CDDcd000862.78E-1863121No hitNo description
PROSITE patternPS00027095118IPR017970Homeobox, conserved site
PROSITE profilePS5084846.166241473IPR002913START domain
SuperFamilySSF559613.71E-36242472No hitNo description
CDDcd088752.14E-122245469No hitNo description
SMARTSM002343.3E-66250470IPR002913START domain
PfamPF018522.5E-54251470IPR002913START domain
Gene3DG3DSA:3.30.530.201.3E-6352470IPR023393START-like domain
SuperFamilySSF559619.16E-24491721No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 732 aa     Download sequence    Send to blast
MFDTNMFDSH PHLLDMSPPH KTTCSESDLA KPCRDDEYET KSITDTMDAP SGDDQDPNPR  60
PKKKGYRRHT QRQIEEMEAF FKQCPHPDDK QRKELSRELG LEPLQVKFWF QNKRTQMKTQ  120
HERNENAILK AENEKLRAEN SRYKEALTNA TCPNCGGPAA LGEMSFDEQH LRIENARLRE  180
EIDRISGIAA KYVGKPVTSS YSNLSSLNNN HVPVGNYGSQ SGTVGEMYGG SDLFRPLPAP  240
ADADKPMIVE LAVAAMEELT RLAQAGEPLW VPSNHHSEIL NEDEYLRTFP TRGLGPKPLG  300
LRSEASRESV VVIMNHINLI DILMDVNQWS TVFCGIVSRA LTLEVLSTGI AGNYNGALQV  360
MSSEFQVASP LVPTRENYFV RYCKQQPDGI WAVVDVSLDN LRPSTISRSR RRPSGCLIQE  420
LPNGYSKVTW IEHVEVDDRA VHSIYRTLVN SGLAFGAKRW VATLERQCER LASSMANNIP  480
AGDLCVITSA EGRKSMMKLA ERMVMSYCTG VGASTAHAWT TLSATGCDDV RVMTRKSTDE  540
PGRPPGIVLS AATSFWLPVP PKRVFHFLRD QNSRNEWDIL SNGGLVQELA HIANGRDPGN  600
CVSLLRVNSA NSSQSNMLIL QESCTDSTGS YVVYAPVDIV AMNVVLSGGD PDYVALLPSG  660
FAILPDGPPA LNGGPIHDVG SGGSLLTVAF QILVDSAPTA KLSLGSVATV NSLIKCTVER  720
IKVAVIRDNT T*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.446820.0hypocotyl
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First expressed in the apical cell after the first asymmetric division of the zygote. Expressed in all proembryo cells until the eight-cell stage, and then restricted to the protoderm in the 16-cell proembryo. Not detected in the torpedo stage, but reappeared later in the L1 layer of the shoot apical meristem in the mature embryo. After germination, the L1 layer-specific expression pattern is maintained in the vegetative shoot apical meristem, inflorescence, floral meristems, and the young floral organ primordia. Finally, expressed in the protoderm of the ovule primordia and integuments and gradually restricted to the endothelium surrounding the embryo sac. {ECO:0000269|PubMed:10571886, ECO:0000269|PubMed:8989876}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G240100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-143AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003517589.10.0homeobox-leucine zipper protein MERISTEM L1 isoform X1
RefseqXP_014632955.10.0homeobox-leucine zipper protein MERISTEM L1 isoform X1
RefseqXP_028181022.10.0homeobox-leucine zipper protein MERISTEM L1-like isoform X1
SwissprotQ8RWU40.0ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1
TrEMBLA0A445M7W50.0A0A445M7W5_GLYSO; Homeobox-leucine zipper protein MERISTEM L1 isoform A
TrEMBLI1JAV70.0I1JAV7_SOYBN; Uncharacterized protein
STRINGGLYMA01G45070.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15083499
Representative plantOGRP14515136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Takada S,Takada N,Yoshida A
    Induction of epidermal cell fate in Arabidopsis shoots.
    Plant Signal Behav, 2013. 8(11): p. e26236
    [PMID:23989220]
  3. Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
    Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
    Plant Cell Physiol., 2015. 56(9): p. 1855-66
    [PMID:26220906]
  4. Katagiri Y, et al.
    The coordination of ploidy and cell size differs between cell layers in leaves.
    Development, 2016. 143(7): p. 1120-5
    [PMID:26903507]
  5. Seeliger I, et al.
    The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition.
    Mol. Genet. Genomics, 2016. 291(5): p. 1835-49
    [PMID:27277595]
  6. Schwarz EM,Roeder AH
    Transcriptomic Effects of the Cell Cycle Regulator LGO in Arabidopsis Sepals.
    Front Plant Sci, 2016. 7: p. 1744
    [PMID:27920789]
  7. Meyer HM, et al.
    Fluctuations of the transcription factor ATML1 generate the pattern of giant cells in the Arabidopsis sepal.
    Elife, 2018.
    [PMID:28145865]