PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G236300.3.p
Common NameGLYMA_01G236300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CPP
Protein Properties Length: 760aa    MW: 82763.7 Da    PI: 6.5011
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G236300.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR512.9e-16470507340
                  TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          +k+CnCkkskClk+YCeCfaag++C e C+C+dC+Nk 
  Glyma.01G236300.3.p 470 CKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNKP 507
                          89**********************************96 PP
2TCR50.63.8e-16554592139
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                          ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN 
  Glyma.01G236300.3.p 554 RHKRGCNCKKSSCLKKYCECYQGGVGCSISCRCEGCKNA 592
                          589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.3E-18468509IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.11469594IPR005172CRC domain
PfamPF036381.0E-11471506IPR005172CRC domain
SMARTSM011144.4E-17554595IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.2E-11556592IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 760 aa     Download sequence    Send to blast
MQDSPVFNYI NSLSPIKPVK SVPISQTFNS LSFSSPPSVF TSPHVSCLKE SRFLRRHNPL  60
GTSKPKVPSE DVIKVHSSEE TLADSTHAHH NSSKLEEENT GKGISVRDAS IELSREHIKF  120
SDELPQALKY NCGSPGFDPP PCGDEANSLL ELPGEAATDV GYVQEGCKTD SVEVEVHLQE  180
VCQMEPKSEG PDCYWDSLIP DALDMLIFNS PGDAEAFKGL MHKPLASSIR LNEFMSMLPH  240
STINNGRKMH IVDSDASGSA PEIEDHCSEL MTATGTNQTQ DNFANVALVT SNSNEKANDQ  300
LVSATHRTIR RRCLDFEMAN VQRKNSDENS NTGSSTSESD ERNVANEKQL LPAKRNGDLQ  360
RGILQGIGLH LNALAALKEY KGIQIEKLSS GRQLSLPSST SLQISTSQEH QNLSLVPVSS  420
ERELDPSDNG VQPAEDCSQP SAYMAGEDFN QNSPKKKRRK SETPGETEGC KRCNCKKSKC  480
LKLYCECFAA GVYCIEPCSC QDCFNKPIHE DTVLQTRKQI ESRNPLAFAP KVIRNSDSVP  540
EIGDDPNKTP ASARHKRGCN CKKSSCLKKY CECYQGGVGC SISCRCEGCK NAFGRKDGSA  600
SVGIETDPEE TEATDKGVTE KALQKTEIQN TEDHPDSATV ATPLRLSRPL LPLPFSSKGK  660
PPRSFVTTIS GSALFASQKL GKPNPLWSQA KHFQTVPDEE IPDILQGDSS PITCIKTSSP  720
NGKRISSPNC DLGSSPSRRG GRRLILQSIP SFPSLTPHP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-1747359114120Protein lin-54 homolog
5fd3_B3e-1747359114120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1454458KKKRR
2454459KKKRRK
3455459KKRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.419380.0cotyledon| hypocotyl| seed coat| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00624PBMTransfer from PK22848.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G236300.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003517569.10.0protein tesmin/TSO1-like CXC 2
TrEMBLI1JAR60.0I1JAR6_SOYBN; Uncharacterized protein
STRINGGLYMA01G44670.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-131TESMIN/TSO1-like CXC 2