PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G233400.1.p
Common NameGLYMA_01G233400, LOC102660452
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 332aa    MW: 37338.9 Da    PI: 7.2547
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G233400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.57.6e-191663148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W++eEd++lvd ++++G g+W++ +r  g++R++k+c++rw +yl
  Glyma.01G233400.1.p 16 KGPWSPEEDKILVDFIEKHGHGSWRALPRLAGLNRCGKSCRLRWTNYL 63
                         79********************************************97 PP
2Myb_DNA-binding51.62.1e-1669114148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg+++ eE++l+++++  lG++ W++Ia++++ gRt++++k+ w+++l
  Glyma.01G233400.1.p  69 RGKFSDEEEQLIINLHSALGNK-WAAIASHLP-GRTDNEIKNLWNTHL 114
                          89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.4731163IPR017930Myb domain
SuperFamilySSF466891.58E-3113110IPR009057Homeodomain-like
SMARTSM007172.4E-151565IPR001005SANT/Myb domain
PfamPF002496.4E-171663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-241770IPR009057Homeodomain-like
CDDcd001674.02E-121863No hitNo description
PROSITE profilePS5129426.14964118IPR017930Myb domain
SMARTSM007173.7E-1568116IPR001005SANT/Myb domain
PfamPF002492.2E-1569114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-2771119IPR009057Homeodomain-like
CDDcd001672.88E-1171114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MMRTPIASND ESGLKKGPWS PEEDKILVDF IEKHGHGSWR ALPRLAGLNR CGKSCRLRWT  60
NYLRPDIKRG KFSDEEEQLI INLHSALGNK WAAIASHLPG RTDNEIKNLW NTHLKKKLMQ  120
MGLDPVTHRP RTDNLNLLSN LQQILAAAKI VSSLTNPSAL SWLQSDATLQ LLQNMYARPT  180
ASNSDPLINP FRTLNSLPDS YSLLNDLLGF NLHSNLQNLY DGNSLSQIQP NFQNFEAPQQ  240
PTQHLNGGRN TSFRESQKQF GSTNNIADPS LSSSLPNLVS ASPERSPFKE AENIMVNSKD  300
CSTSFELTWG DFMDEETTET YWKGFIDRPT F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-28141185108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Specifically and transiently expressed in root endodermal cells overlying the early stages of lateral root primordia formation. {ECO:0000269|PubMed:24902892, ECO:0000269|PubMed:25482809}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G233400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006573852.10.0transcription factor MYB53
RefseqXP_028180156.10.0transcription factor MYB53-like
SwissprotQ9S9Z21e-79MYB93_ARATH; Transcription factor MYB93
TrEMBLK7K5G40.0K7K5G4_SOYBN; Uncharacterized protein
STRINGGLYMA01G44370.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.11e-76myb domain protein 93
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]