PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G225000.1.p
Common NameGLYMA_01G225000, Glyma01g43450.1, LOC100785364
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 315aa    MW: 34994.1 Da    PI: 9.0718
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G225000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.6e-19116166256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           y+GVr+++ +g+WvAeIr p +   r r++lg+++tae Aa a+++a+ kl+ge
  Glyma.01G225000.1.p 116 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDTAEAAAYAYDRAAYKLRGE 166
                          59******9.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.42E-17115175No hitNo description
SMARTSM003801.0E-35116179IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-31116174IPR001471AP2/ERF domain
PROSITE profilePS5103223.301116173IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-22116173IPR016177DNA-binding domain
PRINTSPR003673.9E-10117128IPR001471AP2/ERF domain
PfamPF008473.1E-13117166IPR001471AP2/ERF domain
PRINTSPR003673.9E-10139155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MEGMRDRNSQ LELQDQEGTN IGSSLSKLIL TSGTNTLDSI FSNCPTTTNG STRSNSVLDY  60
LEPFGSLGYE PLGSSVYLRQ RDILQKFYQE SRGNGSYNVP TSSLSNSLTN PCKKKLYRGV  120
RQRHWGKWVA EIRLPQNRMR VWLGTYDTAE AAAYAYDRAA YKLRGEYARL NFPNLKDPTK  180
LGFGDSARLN ALKSSVDAKI QAICQKVKRE RAKKNAAKKL HNSTDPKRGQ SEKPSSSSSP  240
SPSPSPSIFN DNWANQLFSP AVSEDGFWKG ENSHSPASVL TECQTEETEL LFEGCSLARL  300
PSFDPELIWE VLTV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-20115173160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-19113173263ATERF1
3gcc_A1e-19113173263ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.241631e-155cotyledon| leaf
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G225000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310690.0KT031069.1 Glycine max clone HN_CCL_187 AP2-EREBP transcription factor (Glyma01g43450.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003516719.10.0ethylene-responsive transcription factor ERF061
SwissprotQ9C7W22e-65ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLI1JAC90.0I1JAC9_SOYBN; AP2-EREBP transcription factor
STRINGGLYMA01G43450.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71813148
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.19e-53ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]