PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G224800.1.p
Common NameGLYMA_01G224800, LOC100127370
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 323aa    MW: 36581.8 Da    PI: 5.4371
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G224800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.61e-27128188259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dgy+WrKYGqK++ ++++prsYYrCt++   gC ++k+v+rs+ed ++++itY+g+H+++
  Glyma.01G224800.1.p 128 EDGYSWRKYGQKDILSAKYPRSYYRCTFRktkGCFATKQVQRSEEDHTIFDITYRGSHTCK 188
                          8**************************998889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.563122185IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-27123188IPR003657WRKY domain
SuperFamilySSF1182901.57E-24126189IPR003657WRKY domain
SMARTSM007741.9E-37127189IPR003657WRKY domain
PfamPF031062.8E-25128188IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MESDRNWEQN ALISELIQGL EVARKLKEDL SSASSVDARD SHSLLQRILS SYDKALLFLR  60
WNESVSMQQP TKTSSPQSPL SIDKTPLRED AEEDHQELKH NSKKRKMMPK WTEHIRVKIE  120
NGVEGPLEDG YSWRKYGQKD ILSAKYPRSY YRCTFRKTKG CFATKQVQRS EEDHTIFDIT  180
YRGSHTCKRN DAVLPPKSPD YTQDGSLTVK TDNITAPSAS FGCMAQDNYH DLFPSLVLEN  240
DPFFSTLSQT SSLSANTPES NYFVSPTFLE HEFDGVCNKP CPDSELARLV SADTSITSSP  300
IFDFNFSLDA VGIDYPNFPF NI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B7e-181291851874Disease resistance protein RRS1
5w3x_D7e-181291851874Disease resistance protein RRS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197105LKHNSKKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.290250.0flower| leaf
Function -- GeneRIF ? help Back to Top
  1. These results may provide a basis to understand the functions of GmWRKY12 in abiotic stress responses in soybean.
    [PMID: 30562982]
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G224800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0956960.0BT095696.1 Soybean clone JCVI-FLGm-19B24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001341124.10.0WRKY transcription factor 12
RefseqXP_028248070.10.0probable WRKY transcription factor 41
TrEMBLA0A445M6V70.0A0A445M6V7_GLYSO; Putative WRKY transcription factor 41
TrEMBLI1JAC70.0I1JAC7_SOYBN; Uncharacterized protein
STRINGGLYMA01G43420.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.13e-59WRKY family protein
Publications ? help Back to Top
  1. Shi WY, et al.
    The WRKY Transcription Factor GmWRKY12 Confers Drought and Salt Tolerance in Soybean.
    Int J Mol Sci, 2019.
    [PMID:30562982]