PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G224100.1.p
Common NameGLYMA_01G224100, LOC100783772
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 299aa    MW: 33496.9 Da    PI: 5.6326
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G224100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.73.9e-20105155155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          ++++GVr+++ +g+W+AeIrdps    r  r +lg+++taeeAa  +++a+ +l+g
  Glyma.01G224100.1.p 105 KKFRGVRQRP-WGKWAAEIRDPS----RrVRLWLGTYDTAEEAALVYDNAAIRLRG 155
                          59********.**********84....34*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.08E-32105162No hitNo description
SMARTSM003804.7E-36106169IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.7E-30106162IPR001471AP2/ERF domain
PfamPF008474.3E-13106155IPR001471AP2/ERF domain
PROSITE profilePS5103223.209106163IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-21106162IPR016177DNA-binding domain
PRINTSPR003673.5E-10107118IPR001471AP2/ERF domain
PRINTSPR003673.5E-10129145IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048364Biological Processroot development
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MTAPPSKYTH HSKLLIPSEE DPPKHPYPRL VRITVTDTEA TDSSSDEEQH TSTRHRHRKF  60
VNEISIESSC ASENDGAASR KRIRRRSTAT PKGRASDTRL VSNGKKFRGV RQRPWGKWAA  120
EIRDPSRRVR LWLGTYDTAE EAALVYDNAA IRLRGPHALT NFITPPATCH NTDPPPVANG  180
YGYASGEETN DNNNNLFSPT SVLHSCSLSE EAESVRGKDD EYSSVSMSRV KAESPFPVPS  240
EIEFDFRGIS PVPESVLFYD DDWSSEFLTA CEDFGFNRNR DFFQDIDDLF VSDPLLAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-21102162162ATERF1
3gcc_A1e-21102162162ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00027PBMTransfer from AT4G23750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G224100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014632620.10.0ethylene-responsive transcription factor CRF2
RefseqXP_028247986.10.0ethylene-responsive transcription factor CRF2-like
TrEMBLA0A0R0LLN50.0A0A0R0LLN5_SOYBN; Uncharacterized protein
TrEMBLA0A445M6U90.0A0A445M6U9_GLYSO; Ethylene-responsive transcription factor CRF2
STRINGGLYMA01G43350.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.24e-52cytokinin response factor 2