PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.01G217500.1.p | ||||||||
Common Name | GLYMA_01G217500, LOC100814774 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 435aa MW: 49115.7 Da PI: 9.0669 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 62.6 | 7.7e-20 | 53 | 97 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rWT+eEd+ll + vk++ g++Wk+Ia++++ gRt+ qc +rwqk+l Glyma.01G217500.1.p 53 RWTEEEDKLLSEKVKKHNGRNWKKIAAYLP-GRTDVQCLHRWQKVL 97 9*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 55.6 | 1.2e-17 | 103 | 149 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed++l+++v+++G ++W Ia++++ gR +kqc++rw+++l Glyma.01G217500.1.p 103 KGSWTKKEDDRLIELVRKYGIKRWFFIAKYLP-GRIGKQCRERWHNHL 149 799*****************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 50.3 | 5.4e-16 | 155 | 197 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT+eE+++l+ + + +G++ W+ Iar ++ gRt++ +k++w+ Glyma.01G217500.1.p 155 KDAWTEEEELILAYYYQIYGSK-WAEIARILP-GRTDNAIKNHWN 197 689*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.237 | 46 | 97 | IPR017930 | Myb domain |
SMART | SM00717 | 3.0E-16 | 50 | 99 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.21E-16 | 50 | 104 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.6E-17 | 53 | 97 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.9E-22 | 53 | 107 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.46E-14 | 53 | 97 | No hit | No description |
PROSITE profile | PS51294 | 30.613 | 98 | 153 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.86E-31 | 100 | 196 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.3E-17 | 102 | 151 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.8E-17 | 103 | 149 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.62E-15 | 105 | 149 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.5E-26 | 108 | 155 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-14 | 154 | 202 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.567 | 154 | 204 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.1E-13 | 155 | 197 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.7E-21 | 156 | 204 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.59E-10 | 157 | 197 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 435 aa Download sequence Send to blast |
MLEVKKELND FNFDSRLPDG LNLCFSSSPN CNTDTFLQES TPIAGTTKAR ARRWTEEEDK 60 LLSEKVKKHN GRNWKKIAAY LPGRTDVQCL HRWQKVLNPD LVKGSWTKKE DDRLIELVRK 120 YGIKRWFFIA KYLPGRIGKQ CRERWHNHLD PTVKKDAWTE EEELILAYYY QIYGSKWAEI 180 ARILPGRTDN AIKNHWNCSM KKKLDASPLG CDIKVASSGF CASGIRPEHV VAKVEGQSFN 240 GMVSPKQSHW LNRSVDNILT KLILQNDSGE ESCSASSRGT PTPRASRQFL DNSLDCLPLS 300 STVTDEAYES LKRQKVYFSD TELKVGDESD SPLLNLSYSK SANREKKGQA GNGGNYNSNN 360 TMPHSVDEFS ECLSPKTHMA LACAYNNGCT PPTSILKNDT GDINPETLLR NLAMTYENVP 420 SIIRKRTPKK GKLL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 4e-68 | 53 | 204 | 8 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 4e-68 | 53 | 204 | 8 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.01G217500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003516693.1 | 0.0 | transcription factor MYB3R-5 | ||||
TrEMBL | I1JA49 | 0.0 | I1JA49_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA01G42650.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13301 | 25 | 28 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02320.2 | 1e-78 | myb domain protein 3r-5 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.01G217500.1.p |
Entrez Gene | 100814774 |