PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G217400.4.p
Common NameGLYMA_01G217400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 356aa    MW: 38703.9 Da    PI: 4.7923
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G217400.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.41.5e-35251152101
                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                          Fl+k+y++++d++ ++lisw+e+g+sf+v+ + efa+++LpkyFkh+n++SFvRQLn+YgF+kv  ++         weF+++ F++g++
  Glyma.01G217400.4.p  25 FLTKTYQLVDDPSADDLISWNEDGTSFIVWRPAEFARDLLPKYFKHNNYSSFVRQLNTYGFRKVVPDR---------WEFANDCFRRGER 105
                          9*****************************************************************99.........************* PP

                          XXXXXXXXXX CS
         HSF_DNA-bind  92 ellekikrkk 101
                           ll++i+r+k
  Glyma.01G217400.4.p 106 ALLRDIQRRK 115
                          ********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.1E-5721114IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.1E-3822114IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.12E-3522114IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.4E-3225114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-202548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MKPLPAEQTG ESAPTELQRS IPTPFLTKTY QLVDDPSADD LISWNEDGTS FIVWRPAEFA  60
RDLLPKYFKH NNYSSFVRQL NTYGFRKVVP DRWEFANDCF RRGERALLRD IQRRKLLPVP  120
PAAAAPTAVT ANTVTVAVAA PAVRTVSPTT SGDEQVLSSN SSPIAGNNNN TVHRTTSCTT  180
APELLDENER LRKENMQLSN ELSQLKGLCN NILALMTNYA SGFSRQQLES STSAARTVPV  240
PEGKAALELL PAKHVSSADE AGHVGGAAPC ATANAGEAEV PKLFGVSIGL KRCRTECEGE  300
AEGEDQNQMQ TRAQAQTQTQ SSQEPDHGSD VKSEPLDGDD SDDQDHDPRW LELGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-272511429129Heat shock factor protein 1
5d5v_B3e-272511429129Heat shock factor protein 1
5d5v_D3e-272511429129Heat shock factor protein 1
5hdg_A2e-272511410110Heat shock factor protein 1
5hdn_A2e-272511410110Heat shock factor protein 1
5hdn_B2e-272511410110Heat shock factor protein 1
5hdn_C2e-272511410110Heat shock factor protein 1
5hdn_D2e-272511410110Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.291310.0leaf| root| somatic embryo
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G217400.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN8963050.0JN896305.1 Glycine max heat shock transcription factor HSFB2b mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001276302.10.0heat stress transcription factor 3
RefseqXP_003517459.10.0heat stress transcription factor Hsf-03 isoform X1
RefseqXP_006573765.10.0heat stress transcription factor Hsf-03 isoform X1
RefseqXP_028247142.10.0heat stress transcription factor B-2b-like
RefseqXP_028247150.10.0heat stress transcription factor B-2b-like
RefseqXP_028247157.10.0heat stress transcription factor B-2b-like
SwissprotQ9T0D33e-97HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A445M6H20.0A0A445M6H2_GLYSO; Heat stress transcription factor B-2b isoform A
TrEMBLI1JA480.0I1JA48_SOYBN; Uncharacterized protein
STRINGGLYMA01G42640.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.18e-89HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Czarnecka-Verner E,Yuan CX,Fox PC,Gurley WB
    Isolation and characterization of six heat shock transcription factor cDNA clones from soybean.
    Plant Mol. Biol., 1995. 29(1): p. 37-51
    [PMID:7579166]