PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.01G216000.1.p | ||||||||
Common Name | GLYMA_01G216000, LOC100789097 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 227aa MW: 25423.2 Da PI: 4.7231 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.6 | 3.6e-19 | 61 | 111 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +++Wv+e r+p++ + r++lg++ t+e+Aa+a++ a+++l+g Glyma.01G216000.1.p 61 PVYRGVRRRN-KNKWVCEMRVPNN---NSRIWLGTYPTPEMAARAHDVAALALRG 111 68*****888.7*********944...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.2E-14 | 61 | 111 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-21 | 62 | 121 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.391 | 62 | 119 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-29 | 62 | 121 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.6E-27 | 62 | 125 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.95E-28 | 63 | 121 | No hit | No description |
PRINTS | PR00367 | 1.6E-7 | 63 | 74 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-7 | 85 | 101 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0010371 | Biological Process | regulation of gibberellin biosynthetic process | ||||
GO:0016049 | Biological Process | cell growth | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0050826 | Biological Process | response to freezing | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MNIFKSPLDH DLNCGGIFHD SAEASYSSET RSTPSDEEVI LASARPKKRA GRRVFKETRH 60 PVYRGVRRRN KNKWVCEMRV PNNNSRIWLG TYPTPEMAAR AHDVAALALR GKSACLNFAD 120 SRWRLTVPAT TNAEEIRRAA GEAAEAFAVA DGDDVNIDQQ QSVMATNDDE VQEPLQQEEV 180 QDLHDLLLSI ANEPLMSPPP CARDGRDWND VDIFDDDEIS LWNFSI* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.37365 | 0.0 | flower |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00137 | DAP | Transfer from AT1G12610 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.01G216000.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU370553 | 0.0 | EU370553.1 Glycine max cultivar Stout CBF3 protein gene, promoter region and complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003517455.1 | 1e-168 | dehydration-responsive element-binding protein 1E | ||||
Refseq | XP_028247019.1 | 1e-168 | dehydration-responsive element-binding protein 1E-like | ||||
Swissprot | Q9LN86 | 3e-58 | DRE1F_ARATH; Dehydration-responsive element-binding protein 1F | ||||
TrEMBL | A0A445M6D5 | 1e-167 | A0A445M6D5_GLYSO; Dehydration-responsive element-binding protein 1F | ||||
TrEMBL | B3TPR9 | 1e-167 | B3TPR9_SOYBN; CBF3 protein | ||||
STRING | GLYMA01G42500.2 | 1e-168 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF243 | 33 | 224 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12610.1 | 4e-40 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.01G216000.1.p |
Entrez Gene | 100789097 |