PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G207300.1.p
Common NameGLYMA_01G207300, LOC547858
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 269aa    MW: 30100.9 Da    PI: 8.076
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G207300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.64.2e-18113167256
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          rk+ +++k+q  +Lee F+++++++ +++  LAk+lgL  rqV vWFqNrRa+ k
  Glyma.01G207300.1.p 113 RKKLRLSKDQSIVLEESFKEHNTLNPKQKLALAKQLGLRARQVEVWFQNRRARTK 167
                          788899***********************************************98 PP
2HD-ZIP_I/II125.72.1e-40113202191
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          +kk+rlsk+q+ +LEesF+e+++L+p++K +la++Lgl++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +
  Glyma.01G207300.1.p 113 RKKLRLSKDQSIVLEESFKEHNTLNPKQKLALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELR-A 201
                          69*************************************************************************************9.5 PP

          HD-ZIP_I/II  91 l 91 
                          l
  Glyma.01G207300.1.p 202 L 202
                          5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046188.8E-22486IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.603.9E-1786170IPR009057Homeodomain-like
SuperFamilySSF466898.55E-18107170IPR009057Homeodomain-like
PROSITE profilePS5007117.119109169IPR001356Homeobox domain
SMARTSM003894.6E-15111173IPR001356Homeobox domain
PfamPF000461.4E-15113167IPR001356Homeobox domain
CDDcd000862.30E-14113170No hitNo description
PRINTSPR000312.2E-5140149IPR000047Helix-turn-helix motif
PROSITE patternPS000270144167IPR017970Homeobox, conserved site
PRINTSPR000312.2E-5149165IPR000047Helix-turn-helix motif
PfamPF021832.0E-11169203IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.6E-27169212IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MTVQKEDLGL SLSLSFPLLS SSPSSHNPQK PSWNDPIFTS SGEAGSFLRG IDVNRLPSVV  60
DCEEEAGVSS PNSTVSSVSG KRSERETNGE ENDTDRACSR GIISDEEDAE TSRKKLRLSK  120
DQSIVLEESF KEHNTLNPKQ KLALAKQLGL RARQVEVWFQ NRRARTKLKQ TEVDCEFLKR  180
CCENLTEENR RLQKEVQELR ALKLSPQFYM HMTPPTTLTM CPSCERVAVP PSSAVDPATR  240
HHHVPPSHPR AFPIGPWARP FDALRPRS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111117SRKKLRL
2161169RRARTKLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.517400.0cotyledon| hypocotyl| leaf| root| somatic embryo| stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that plays a role in auxin-mediated morphogenesis. Negatively regulates lateral root elongation. {ECO:0000269|PubMed:12492842}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G207300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By indole-3-acetic acid (IAA). {ECO:0000269|PubMed:12492842}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX924890.0X92489.1 G.max mRNA for homeobox-leucine zipper protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003517410.10.0homeobox-leucine zipper protein HAT4
RefseqXP_028246129.10.0homeobox-leucine zipper protein HAT4-like
SwissprotP466011e-103HAT2_ARATH; Homeobox-leucine zipper protein HAT2
TrEMBLA0A445M6J00.0A0A445M6J0_GLYSO; Homeobox-leucine zipper protein HAT2
TrEMBLK7K4Y90.0K7K4Y9_SOYBN; Uncharacterized protein
STRINGGLYMA01G41581.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123934105
Representative plantOGRP19616156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.12e-87homeobox protein 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]